Generate coverage histogram plot

Description

Generate coverage histogram plot.

Methods

signature(object = "ChIPQCexperiment")

Generate coverage histogram plots for all the samples in an experiment.

signature(object = "list")

Generate coverage histogram plots for all the samples in a list of ChIPQCsamples.

signature(object = "ChIPQCsample")

Generate coverage histogram plots for a sample.

Note

Uses ggplot2 for plotting, and returns a ggplot2 plot dataframe.

Author(s)

Thomas Carroll and Rory Stark

See Also

ChIPQC-package, ChIPQCexperiment, ChIPQCsample

Examples

data(example_QCexperiment)
plotCoverageHist(exampleExp,facetBy=c("Tissue","Factor"))
plotCoverageHist(QCsample(exampleExp,1))