| CNORfeeder-package | R package to integrate literature-constrained and data-driven methods to infer signalling networks from perturbation experiments |
| Binference | Bayesian network inference |
| CNORfeeder | R package to integrate literature-constrained and data-driven methods to infer signalling networks from perturbation experiments |
| gaBinaryT1W | Genetic algorithm used to optimise a model differently weighting links |
| linksRanking | Ranking of links inferred from data |
| makeBTables | Make Boolean tables |
| mapBTables2model | Integrate Boolean tables with the model |
| mapDDN2model | Integrate data-drive network with the model |
| MIinference | Mutual information based network inference |
| PPINigraph | Protein-protein interaction netwrok |
| UniprotIDdream | Uniprot identifiers for proteins in DreamModel |
| weighting | Weight integrated links. |