CGHbase-package         CGHbase: Base functions and classes for
                        arrayCGH data analysis.
Wilting                 Cervical cancer arrayCGH data
WiltingCalled           Cervical cancer arrayCGH data called with
                        CGHcall
WiltingNorm             Normalized log2 ratios from cervical cancer
                        arrayCGH data.
WiltingRaw              Raw log2 ratios from cervical cancer arrayCGH
                        data.
WiltingRegions          Regions of cervical cancer arrayCGH data as
                        defined by CGHregions
WiltingSeg              Segmented log2 ratios from cervical cancer
                        arrayCGH data.
avedist                 Retrieve regions information from cghRegions
                        object.
cghCall                 Class to contain and describe called array
                        comparative genomic hybridization data.
cghRaw                  Class to contain and describe raw or normalized
                        array comparative genomic hybridization data.
cghRegions              Class to contain and describe array comparative
                        genomic hybridization regions data.
cghSeg                  Class to contain and describe segmented array
                        comparative genomic hybridization data.
chromosomes             Retrieve feature position data from cgh
                        objects.
copynumber              Retrieve copynumber data from cgh objects.
frequencyPlot           Visualization of aCGH regions.
frequencyPlotCalls      Visualization of aCGH profiles.
make_cghRaw             Convert a dataframe or textfile to an object of
                        class cghRaw.
plot.cghRaw             Plot aCGH data.
probloss                Retrieve call probabilities from a cghCall
                        object.
regions                 Retrieve regions data from cghRegions object.
summaryPlot             Visualization of aCGH profiles.
