| summariseChrExpr {CAGEr} | R Documentation |
Counts the number of molecules detected per chromosome, normalises
by library size and stores the raw and normalised results in the
CAGEr object.
summariseChrExpr(object) ## S4 method for signature 'CAGEexp' summariseChrExpr(object)
object |
A |
Modifies the CAGEexp by adding a “seqNameTotals” experiment
containing matrices where rows represent chromosomes and columns represent samples.
Charles Plessy
seqNameTotals
Other CAGEr object modifiers: CTSStoGenes,
CustomConsensusClusters,
aggregateTagClusters,
annotateCTSS, clusterCTSS,
cumulativeCTSSdistribution,
getCTSS, normalizeTagCount,
quantilePositions
summariseChrExpr(exampleCAGEexp)