| seqNameTotalsSE {CAGEr} | R Documentation |
Get or set a SummarizedExperiment summarising whole-chromosome
expression levels in the experiment slot seqNameTotals and the sample metadata
of the CAGEexp object.
seqNameTotalsSE(object) ## S4 method for signature 'CAGEset' seqNameTotalsSE(object) ## S4 method for signature 'CAGEexp' seqNameTotalsSE(object) seqNameTotalsSE(object) <- value
object |
A |
value |
A SummarizedExperiment object where rows represent reference sequences such as chromosomes. |
Charles Plessy
summariseChrExpr
Other CAGEr accessor methods: CTSSclusteringMethod,
CTSScoordinates,
CTSScumulativesTagClusters,
CTSSnormalizedTpm,
CTSStagCountTable,
CTSStagCount, GeneExpDESeq2,
GeneExpSE,
consensusClustersGR,
genomeName, inputFilesType,
inputFiles, librarySizes,
sampleLabels, tagClusters
seqNameTotalsSE(exampleCAGEexp)