| ranges2genes {CAGEr} | R Documentation |
Assign gene symbol(s) to Genomic Ranges.
ranges2genes(ranges, genes)
ranges |
Genomics Ranges object, for example extracted from a
RangedSummarizedExperiment object with the |
genes |
A |
This private (non-exported) function is used to assign gene symbols
to genomic ranges. It is run by annotateCTSS, which has to
be run before CTSStoGenes.
A Rle character vector of same length as the GRanges object,
indicating one gene symbol or a semicolon-separated list of gene symbols for each
range.
Charles Plessy
CTSScoordinatesGR, exampleZv9_annot
Other CAGEr annotation functions: annotateCTSS,
plotAnnot, ranges2annot,
ranges2names
Other CAGEr gene expression analysis functions: CTSStoGenes,
GeneExpDESeq2
CAGEr:::ranges2genes(CTSScoordinatesGR(exampleCAGEexp), exampleZv9_annot)