inputFiles {CAGEr}R Documentation

Extracting paths to input files from CAGEr objects

Description

Extracts the paths to CAGE data input files from CAGEset and CAGEexp objects.

Usage

inputFiles(object)

## S4 method for signature 'CAGEset'
inputFiles(object)

## S4 method for signature 'CAGEexp'
inputFiles(object)

inputFiles(object) <- value

## S4 replacement method for signature 'CAGEset'
inputFiles(object) <- value

## S4 replacement method for signature 'CAGEexp'
inputFiles(object) <- value

Arguments

object

A CAGEset or CAGEexp object.

value

A character vector with one file path per sample.

Value

Returns a character vector of paths to CAGE data input files.

Author(s)

Vanja Haberle

Charles Plessy

See Also

Other CAGEr accessor methods: CTSSclusteringMethod, CTSScoordinates, CTSScumulativesTagClusters, CTSSnormalizedTpm, CTSStagCountTable, CTSStagCount, GeneExpDESeq2, GeneExpSE, consensusClustersGR, genomeName, inputFilesType, librarySizes, sampleLabels, seqNameTotalsSE, tagClusters

Other CAGEr setter methods: genomeName, inputFilesType, sampleLabels, setColors

Examples

inputFiles(exampleCAGEset)
[Package CAGEr version 1.29.2 Index]