| import.bam {CAGEr} | R Documentation |
Imports CTSS data from a BAM file.
import.bam(filepath, filetype, sequencingQualityThreshold = 10, mappingQualityThreshold = 20)
filepath |
The path to the BAM file. |
filetype |
bam or bamPairedEnd. |
sequencingQualityThreshold |
See getCTSS(). |
mappingQualityThreshold |
See getCTSS(). |
Other loadFileIntoGPos: bam2CTSS,
import.CTSS, import.bam.ctss,
import.bedCTSS,
import.bedScore,
import.bedmolecule,
loadFileIntoGPos,
moleculesGR2CTSS
# TODO: add exmaple file
# import.bam(system.file("extdata", "example.bam", package = "CAGEr"))