| import.bam.ctss {CAGEr} | R Documentation |
Imports CTSS data from a BAM file.
import.bam.ctss(filepath, filetype, sequencingQualityThreshold, mappingQualityThreshold, removeFirstG, correctSystematicG, genome)
filepath |
The path to the BAM file. |
filetype |
bam or bamPairedEnd. |
sequencingQualityThreshold |
See getCTSS(). |
mappingQualityThreshold |
See getCTSS(). |
removeFirstG |
See getCTSS(). |
correctSystematicG |
See getCTSS(). |
genome |
See coerceInBSgenome(). |
Returns a CTSS object.
Other loadFileIntoGPos: bam2CTSS,
import.CTSS, import.bam,
import.bedCTSS,
import.bedScore,
import.bedmolecule,
loadFileIntoGPos,
moleculesGR2CTSS