Get /set CTSS clustering method

Description

Returns or sets the name of the method that was used make tag clusters from the CTSSs of a CAGEr object.

Usage

CTSSclusteringMethod(object)

## S4 method for signature 'CAGEset'
CTSSclusteringMethod(object)

## S4 method for signature 'GRangesList'
CTSSclusteringMethod(object)

## S4 method for signature 'CAGEexp'
CTSSclusteringMethod(object)

CTSSclusteringMethod(object) <- value

## S4 replacement method for signature 'CAGEset'
CTSSclusteringMethod(object) <- value

## S4 replacement method for signature 'GRangesList'
CTSSclusteringMethod(object) <- value

## S4 replacement method for signature 'CAGEexp'
CTSSclusteringMethod(object) <- value

Arguments

Author(s)

Vanja Haberle

Charles Plessy

See Also

clusterCTSS

Other CAGEr accessor methods: CTSScoordinates, CTSScumulativesTagClusters, CTSSnormalizedTpm, CTSStagCountTable, CTSStagCount, GeneExpDESeq2, GeneExpSE, consensusClustersGR, genomeName, inputFilesType, inputFiles, librarySizes, sampleLabels, seqNameTotalsSE, tagClusters

Other CAGEr clusters functions: CTSScumulativesTagClusters, CustomConsensusClusters, aggregateTagClusters, clusterCTSS, consensusClustersDESeq2, consensusClustersGR, cumulativeCTSSdistribution, plotInterquantileWidth, quantilePositions, tagClusters

Examples

CTSSclusteringMethod(exampleCAGEset)
CTSSclusteringMethod(exampleCAGEexp)