clusterSitesToGR {BiSeq}R Documentation

A function to obtain a GRanges object of CpG clusters from BSraw and BSrel objects

Description

This function allows to get the start and end positions of CpG clusters from a BSraw or BSrel object, when there is a cluster.id column in the rowRanges slot.

Usage

clusterSitesToGR(object)

Arguments

object

A BSraw or BSrel object with a cluster.id column in the rowRanges slot. Usually the output of clusterSites.

Value

An object of class GRanges is returned.

Author(s)

Katja Hebestreit

See Also

clusterSites

Examples

data(rrbs)
rrbs.clustered <- clusterSites(rrbs)

clusterSitesToGR(rrbs.clustered)
[Package BiSeq version 1.27.3 Index]