BgeeMetadata S4 class

Description

An S4 class that contains all information to retrieve intergenic regions generated by Bgee.

Slots

intergenic_release

Bgee intergenic release that will be used

all_releases

list of all reference intergenic releases that can be used to generate your present/absent expression calls.

intergenic_prefix

String used to generate an intergenic release specific output directory

custom_intergenic_path

path to a local version of reference intergenic fasta file. If NULL (by default) the reference intergenic fasta file will be downloaded. If not NULL BgeeCall will merge this local reference intergenic file with the transcriptome. Except if you generated your own intergenic regions always keep it NULL.