f86a723627e8bb4c13d6b38f33680967 *DESCRIPTION
1d827f2f5f6aa8293f0742e9c62ed7c1 *INDEX
8a267ed465fa0b85c78ad42071fc3a1d *Meta/Rd.rds
e52099b189c9a296cc26015721e4fca4 *Meta/data.rds
e00065855163c282e8adab2a116bf019 *Meta/features.rds
edcf2227ecc62339b4d1e9ca1f565fbc *Meta/hsearch.rds
5799652e38c052686f6701d85c6cc473 *Meta/links.rds
69f319db855ef2453252e35572595ada *Meta/nsInfo.rds
e4524e1e468fe4dd435e1b4a20dbb1ec *Meta/package.rds
1b083d9ab64c996ffcebbcd6406ed19a *Meta/vignette.rds
da32090d332fc000ee0adb635fa7d1e5 *NAMESPACE
bb97bdfe5bb43531c055075a2bb87b4d *NEWS.md
ebf0fc819595d631b8bf280c4b049940 *R/BRGenomics
26936652ab94e9021083ae2cf75eacee *R/BRGenomics.rdb
276be12deb13d43ba3628c43472c2d83 *R/BRGenomics.rdx
f485e77efc81964be45ea75d0c37ca47 *data/PROseq.rda
35dfe7b8228c25b72334a0f0169da2d5 *data/PROseq_paired.rda
5ac0a57a860d67b65fd42473daa15229 *data/txs_dm6_chr4.rda
fcfedb955303eaf4356811f23e211eb5 *doc/AnalyzingMultipleDatasets.R
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6528ae1d559a014312becc35827843e8 *doc/AnalyzingMultipleDatasets.html
2cbace5e78052cd2d94bdbcaaee6eedc *doc/DESeq2WithGlobalPerturbations.R
eee6f46bc4467488d3d4c4fed2dd8825 *doc/DESeq2WithGlobalPerturbations.Rmd
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7e80672d20cc99295fb92206aeede062 *doc/GettingStarted.R
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2b114f02d463e6c071cf6f9098f8da03 *doc/ImportingModifyingAnnotations.R
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ca66299dd86f3043d39e3227f10f88d6 *doc/Overview.Rmd
326a8a24367d16a20da208e3ec2d329d *doc/Overview.html
cdaea78ae707d1b22d357608f7e33b99 *doc/ProfilePlotsAndBootstrapping.R
af081a25222e193dfb372cbf88c85869 *doc/ProfilePlotsAndBootstrapping.Rmd
2dbf45000a2216cffca2da1f97365299 *doc/ProfilePlotsAndBootstrapping.html
e06d06e7507421921dfd2fa317f9869e *doc/SequenceExtraction.R
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3b6220345cc04eb5a829c94befac8846 *doc/SequenceExtraction.html
76808989b258ead387be4293050f7185 *doc/SignalCounting.R
1a15b372dbbe50893b933c51964b06c4 *doc/SignalCounting.Rmd
5ce3a7552e11d187b7890d99582ee6f9 *doc/SignalCounting.html
6764a771e7f1605be1247f4898524e82 *doc/SpikeInNormalization.R
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05b860ee553814d1da456d7399e5e1e5 *doc/SpikeInNormalization.html
5f18bdf85880cffaee2e34daff0975cb *doc/index.html
1ba6d1508e904f843fe4aff26ac9b1cb *extdata/PROseq_dm6_chr4.bam
21fe1dd3817bd23aca4aadf02a387a35 *extdata/PROseq_dm6_chr4_minus.bedGraph
7095a74eb23fa31c508cf0a504d00e4b *extdata/PROseq_dm6_chr4_minus.bw
238507391acfa1cbfa4d2fc5df08c517 *extdata/PROseq_dm6_chr4_plus.bedGraph
98b01ee47e90771b9aa557633c318f64 *extdata/PROseq_dm6_chr4_plus.bw
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23d972a8da38e2ef24fd8f70cd740182 *help/AnIndex
0bdf37b54db17b6f86cedf85ccae9648 *help/BRGenomics.rdb
9ef688490eb578050a4c4d28cf657b5f *help/BRGenomics.rdx
c7626c32ff6dd21cc5dcc66073f236fd *help/aliases.rds
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6da70a5ad4e5b13935cc29a0972a4d64 *html/00Index.html
034e097006bb484ccdb1d0d5083420a6 *html/BRGenomics-package.html
a5d4d1b7d9234ba9efdad74b4febc7e8 *html/PROseq-data.html
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9b1238de415707944f614e1c5033a859 *html/bootstrap-signal-by-position.html
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0a1319e714de5cb692fa7a59596feab6 *html/getCountsByPositions.html
3759c0985e9b1f3e7deb5a09ac42e066 *html/getCountsByRegions.html
659761875d320220fe786f57ab0ed850 *html/getDESeqDataSet.html
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1fbd469060fd3024568dc94b65392da2 *html/getMaxPositionsBySignal.html
1275541028ba01be60d1c33773b67577 *html/getPausingIndices.html
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4e8f099341253590fc7871b4cf942d2a *html/getSpikeInNFs.html
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1af598c7d087fa202d8c388595328074 *html/import-functions.html
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36a06cadfe98b95245072f3e05a29f83 *html/makeGRangesBRG.html
6a70abfde5417fb341aba3ae212e1856 *html/mergeGRangesData.html
6d1a53744fe418f1e55bc5f79d492f98 *html/mergeReplicates.html
44d65eceee7347cbe1e0dcce237d8e42 *html/subsampleBySpikeIn.html
4716b8db91f5a4a60eb666a8150fadf6 *html/subsampleGRanges.html
ad2fe23fc1f0d3c010e323c959f65698 *html/subsetRegionsBySignal.html
6dbf4bea99a3fbd9253ae7d83f0ffc14 *html/tidyChromosomes.html
7915d7d1835ed49caf33ed6c5a726ae3 *html/txs_dm6_chr4.html
c74f85d2e4ca2355d964e1a7acfbfbd9 *script/PROseq_data.R
