R: Karyogram-like chromosome overview

plotKaryogram {AneuFinder}

R Documentation

Karyogram-like chromosome overview

Plot a karyogram-like chromosome overview with read counts and CNV-state from a aneuHMM object or binned.data.

plotKaryogram(model, both.strands = FALSE, plot.breakpoints = TRUE,
  file = NULL)

`model`	A `aneuHMM` object or `binned.data`.
`both.strands`	If `TRUE`, strands will be plotted separately.
`plot.breakpoints`	Logical indicating whether breakpoints should be plotted.
`file`	A PDF file where the plot will be saved.

A ggplot object or NULL if a file was specified.

[Package AneuFinder version 1.15.2 Index]