plot.aneuHMM {AneuFinder}R Documentation

Plotting function for aneuHMM objects

Description

Make different types of plots for aneuHMM objects.

Usage

## S3 method for class 'aneuHMM'
plot(x, type = "profile", ...)

Arguments

x

An aneuHMM object.

type

Type of the plot, one of c('profile', 'histogram', 'karyogram'). You can also specify the type with an integer number.

karyogram

A karyogram-like chromosome overview with CNV-state.

histogram

A histogram of binned read counts with fitted mixture distribution.

karyogram

An profile with read counts and CNV-state.

...

Additional arguments for the different plot types.

Value

A ggplot object.

[Package AneuFinder version 1.15.2 Index]