Generating tree pedigree data

Description

Generating tree pedigree data

Usage

makePHYLO(tall, pedigree, sample.info)

Arguments

Value

tree pedigree data file.

Examples

## Get some toy data
file1 <- system.file("extdata/soma/","AB-dMatrix-CG-0.99.csv", package="AlphaBeta")
file2 <- system.file("extdata/soma/","sampleInfo.csv", package="AlphaBeta")
d.matrix <- read.table(file1, sep="\t", header=TRUE, stringsAsFactors = FALSE)
sample.info <- read.table(file2, sep="\t", header=TRUE, stringsAsFactors = FALSE)
# in our case, the total age of tree is 330
out <- makePHYLO(tall=330, pedigree = d.matrix, sample.info = sample.info)