minCountFilt {AllelicImbalance} | R Documentation

## minCountFilt methods

### Description

filter on minCountFilt snps

### Usage

    minCountFilt(x, ...)

    ## S4 method for signature 'ASEset'
    minCountFilt(
      x,
      strand = "*",
      threshold.counts = 1,
      sum = "all",
      replace.with = "zero",
      return.class = "ASEset"
    )

### Arguments

`x` | `ASEset` object
`...` | internal param
`strand` | strand to infer from
`threshold.counts` | cutoff for read counts (see details)
`sum` | 'each' or 'all'
`replace.with` | only option 'zero'
`return.class` | 'ASEset', 'array' or 'matrix'

### Details

Description info here

### Author(s)

Jesper R. Gadin, Lasse Folkersen

### Examples

    #load example data
    data(ASEset)
    a <- ASEset

    minCountFilt(a)

[Package AllelicImbalance version 1.25.2 Index]