Defunct functions

Description

Functions that have passed on to the function afterlife. Their successors are also listed.

Usage

calculateQCMetrics(...)

## S4 method for signature 'SingleCellExperiment'
normalize(object, ...)

centreSizeFactors(...)

Arguments

Details

calculateQCMetrics is succeeded by perCellQCMetrics and perFeatureQCMetrics.

normalize is succeeded by logNormCounts.

centreSizeFactors has no replacement - the SingleCellExperiment is removing support for multiple size factors, so this function is now trivial.

Value

All functions error out with a defunct message pointing towards its descendent (if available).

Author(s)

Aaron Lun

Examples

try(calculateQCMetrics())