| tileMetrics {savR} | R Documentation |
Returns the Tile Metrics SAV data.
tileMetrics(project) ## S4 method for signature 'savProject' tileMetrics(project)
project |
SAV project |
Metrics for each tile are encoded in the following format:
| cluster density: | 100 |
| PF cluster density: | 101 |
| number of clusters: | 102 |
| number of PF clusters: | 103 |
| phasing for read N: | (200 + (N - 1) * 2) |
| prephasing for read N: | (201 + (N - 1) * 2) |
| percent aligned for read N: | (300 + N - 1) |
| control lane: | 400 |
lane:Lane number
tile:Tile ID
code:Code described above
value:Value for code key
sorted data.frame of tile metrics
Codes for Tile Metrics were obtained from the Python Illuminate package:
https://bitbucket.org/invitae/illuminate
example(savR) colnames(tileMetrics(fc))