| buildDESeq {rnaSeqMap} | R Documentation |
Creates CountDataSet from the data in the database using the list
of genes supplied - for further analysis with DESeq
buildDESeq(genes,exps,conds=NULL)
genes |
vector of Ensembl gene IDs |
exps |
vector of experiments |
conds |
Vector of experimental condition descriptions for the samples |
CountDataSet object filled with the data of gene-level counts of reads
Michal Okoniewski, Anna Lesniewska
buildDGEList
# if (xmapConnected())
# {
# data(sample_data_rnaSeqMap)
# gg <- names(rs.list)
# cds <- buildDESeq(gg,1:6, c("a","b","b","a","a","b"))
# }