c0d901f21a5949b108965ef287c036f0 *DESCRIPTION
feece4d70836aeffb2a4d77e07442dd0 *INDEX
1ebbd3e34237af26da5dc08a4e440464 *LICENSE
c0ccec4879b22f4cf81902f3ce210e6b *Meta/Rd.rds
f51f28e08b4fc215e2f6955f2c2ae531 *Meta/features.rds
e0e7560ed48fbf6524efb438226bc12e *Meta/hsearch.rds
170aed708fa5f02a0c8fb585995ab73a *Meta/links.rds
f19af81e0d6a4a74e9851619a1c87e05 *Meta/nsInfo.rds
b1d1e870e7c871bf0af324977fd868c1 *Meta/package.rds
88a9bbf74f1ba4c93c5a25c525e29903 *Meta/vignette.rds
1b7d3ed794e216d24b6dc51f551d01ef *NAMESPACE
e03f03a38ffadec3c9300b4b370f2acd *NEWS.md
ebf0fc819595d631b8bf280c4b049940 *R/ribosomeProfilingQC
27d543358e96cd9bfa5cc7883806477d *R/ribosomeProfilingQC.rdb
48082d8b6c1485ff57fb4569c31283ee *R/ribosomeProfilingQC.rdx
c6d564d48ee16aa81c553a6696c8205b *doc/index.html
c35230906e3bc73789dbe78010db27e5 *doc/ribosomeProfilingQC.R
bb959697aa8861b31c0605c6a189e034 *doc/ribosomeProfilingQC.Rmd
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dc0698fd222cef1461cc1e246168602b *extdata/CDS.rds
4d05c3d30c9a118aaa83215867bd5804 *extdata/Danio_rerio.GRCz10.91.chr1.gtf.gz
f368ba9e30a5c969657248591164d9e4 *extdata/RPF.KD1.1.bam
56b9bff6638c995a646802870bb7e171 *extdata/RPF.KD1.1.bam.bai
dc952dd70a2faea94ab7312c2ad0c05b *extdata/RPF.KD1.2.bam
f299987f4abcb682eebc6b94d39d7b86 *extdata/RPF.KD1.2.bam.bai
21b92ab3d165cdeedb23b63f2829010c *extdata/RPF.WT.1.bam
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782ef1104763a11d90d3ab5f52ed842d *extdata/RPF.WT.2.bam
cb5d9e174d97f668acc3043ea1cd9041 *extdata/RPF.WT.2.bam.bai
37b786078d08f83fe9ee24af15c53394 *extdata/RPF.chr1.bad.bam
64d083127fb8ae8ae078f8c93ac1fcfe *extdata/RPF.chr1.bad.bam.bai
5ff209d64453110b7e05fe8a3e7e2c17 *extdata/cnts.rds
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ddfe8c09943bf303fb2cb290cfe78116 *extdata/mRNA.WT.1.bam
06caf4c1848f35e32534ca338e3bff4a *extdata/mRNA.WT.1.bam.bai
03c7db416a339ad20fe128ac7e7a9c27 *extdata/mRNA.WT.2.bam
d5798ab9a7796df6eef5e2ef19ed3ab3 *extdata/mRNA.WT.2.bam.bai
f84f0631bc6a1ef2dc9e8adcea19f6f8 *extdata/samplePc.rds
da43f4b4daaa43024839e92b7c18b895 *help/AnIndex
51c4f1a85f533fda498a11904c2d7d42 *help/aliases.rds
659f66bf9a5ae795731d1a171c18a4cf *help/paths.rds
3b90cb13c5454915863684c96cc6ed72 *help/ribosomeProfilingQC.rdb
368ba2136a77bafb2107ecb9b3492c38 *help/ribosomeProfilingQC.rdx
0220ac9fd06675477623e47e3140f15f *html/00Index.html
1394c97daa3ddc41618ee0722b2d4aee *html/FLOSS.html
5178ddddf67354113bf9a04b5c25ad49 *html/PAmotif.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
5e7cdce116449df5b269b932d75ee1f4 *html/assignReadingFrame.html
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91c8d7a23876549414c7693250566dd4 *html/countReads.html
0f358b76407d2080c833f33fdb26396b *html/coverageDepth.html
ca6a70c40c84be585c6901571e39b606 *html/coverageRates.html
d2dc022f70a9cd0a243b6187d7534452 *html/cvgd-class.html
8ae002c9ad4f587d4dbb2c903bd988c5 *html/estimatePsite.html
ee8a70f162f37b78069965cb96e90fa8 *html/filterCDS.html
304e4dd204c4de80472bcdce1c73acea *html/frameCounts.html
fd0a4c3d8b8f10efdf48aa4d7a26360d *html/getFPKM.html
ffd618a4ca750e5c092fe01be3b0025f *html/getORFscore.html
0c123b049db492b2b512b2b1b46d5b8f *html/getPsiteCoordinates.html
856e82ec70098f7479cb68349544330e *html/ggBar.html
6428c98046fb1b40b220db0d575fae8d *html/metaPlot.html
e55f9e9b4a39fbbbbe0009c08b585c83 *html/normByRUVs.html
ee5b660ba0869300825fc7815dc5237a *html/plotDistance2Codon.html
71bc0c701465263a8e391072144ae0e8 *html/plotFrameDensity.html
4eeb26bc7a907d1ac70a06374757e5ea *html/plotSpliceEvent.html
796e8033fe00d6244eea0e90a109cb36 *html/plotTE.html
492a735f5a95dfc36b09a4c3d3a6c707 *html/plotTranscript.html
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5cf90e00adb5235b639550580bb33539 *html/readsDistribution.html
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e8e5dd8697ff98aec0cd3f8240488804 *html/readsLenToKeep.html
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72e7e0cef582a1882500468343515323 *html/shiftReadsByFrame.html
6a3bb5db921f2f1c887715f62e16eaa1 *html/simulateRPF.html
8158df4058301b0d9fec2342f7602d16 *html/spliceEvent.html
34a4e43114cd9091ac67fcb3062f6e0c *html/strandPlot.html
6b062ec18b71b5cf8ffbbfd7311685d2 *html/summaryReadsLength.html
2ed3ba405b87fe4c356cf93f18060263 *html/translationalEfficiency.html
