riboCoding-class {riboSeqR} | R Documentation

## Class "riboCoding"

### Description

The `riboCoding` class contains a set of coordinates defining coding sequences, a set of replicate data for the experimental samples, an array of ribosome footprint abundances for each coding sequence split by size class and frame, and a similar array describing the abundance of unique sequences aligning within each coding sequence.

### Slots

`CDS`:

  Object of class `"GRanges"` defining the coordinates of coding sequences.

`hits`:

  An array describing the abundances of ribosome footprints, split by size class and frame (relative to coding start) for each of the coding sequences defined in the ‘CDS’ slot.

`unqHits`:

  An array describing the abundances of unique sequences of ribosome footprints, split by size class and frame (relative to coding start) for each of the coding sequences defined in the ‘CDS’ slot.

`replicates`:

  A factor defining the replicate structure of the samples for which data are held. Replicate samples will have the same level in this factor.

### Methods

Methods ‘[’ and ‘show’ are defined for this class.

### Author(s)

Thomas J. Hardcastle

[Package riboSeqR version 1.22.0 Index]