ae075240be742c0969aad9c94e6a5e31 *CITATION
9887edb9c4dc0d8532bbe4f7ff8b98ac *DESCRIPTION
83e32a02102bd5db99b1abe76e72e452 *INDEX
f3d8c7f7a60b989da2317b528c847bed *Meta/Rd.rds
85aed2a03d09ef2c02de01e3c88b5de4 *Meta/data.rds
e00065855163c282e8adab2a116bf019 *Meta/features.rds
9b65d5896aaf4f19511d8afdcdd74c97 *Meta/hsearch.rds
d32989d3173d9f7747374157bfc25611 *Meta/links.rds
4cf0032180cdd33a97aa3d34b06955ae *Meta/nsInfo.rds
68e890dc2d6ed93c4eb605a5ecc5eb40 *Meta/package.rds
77915cbbecdb977188691d69f8dfcfcb *Meta/vignette.rds
e252bd722268a57cd6ebc4065b35b52b *NAMESPACE
88799e12a0bcb0bfc36b476bcb5951ad *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/rTRM
c426cd6b5e43f59ea3b83ea8abca853f *R/rTRM.rdb
a20f06ffbbbedaf6bed5994e5c580c24 *R/rTRM.rdx
39cf1ac4f3cf9c8cc4705db309db9578 *data/biogrid_hs.rda
ad0a8c78b1877871d539d9de7f700ea3 *data/biogrid_mm.rda
f246fde7976b255f72367afee71bf9d9 *data/datalist
2bd1f5b9fc49bd5ba9911be8dd79973a *db/database.db
3c90d8c315cde66b14a4f346f33a7a85 *doc/index.html
ec23417ecfa7b09ee66b424f6cb1d30e *doc/rTRM_Introduction.R
10e871217ea32f1b3b025655c7337042 *doc/rTRM_Introduction.Rnw
9f709ebb4ced7d3a755e6be99addd431 *doc/rTRM_Introduction.pdf
98b9ba03259ae6d5fc4516e7a658a10a *extra/ESC-expressed.txt
f658dbb8940b92bfdafc3dcf2cdb698f *extra/ESC_Sox2_peaks.txt
fbb496fd5991c64b1437c46008ae2c4a *extra/example.rda
ef10b0ee264bece1a4bc5de1d57d5102 *extra/pwm_mm_logn.rda
437a3b466c73481572d3acda987eacef *extra/sox2_enr.rda
8bf034224b0f19bbbb6cb98c90e979af *extra/sox2_motif_list.rda
380492bb98fe9ecd48241bc9ab42771c *extra/test.R
4fd5f8a7026274a26f8077d8a56011be *help/AnIndex
262da579af0534ebfea4e83ded6bb8da *help/aliases.rds
d1099ac603ae58b14fedb37167557176 *help/paths.rds
f5dc77945750f49c0940ccbc0d4adc80 *help/rTRM.rdb
921ad25555fa96ddf38e9c8e8828f1a7 *help/rTRM.rdx
f47522df6b66e04cb46fdfe17db3aa4f *html/00Index.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
e1490a66cacaadfcf643c4a1ad6e76b4 *html/annotateFreq.html
bcf37e7cedabd2e8954b5d112ca86395 *html/annotateModule.html
af2920f4f5c07ee239a9c690fe138ea8 *html/annotateTRM.html
73c1683120e2ffa1755d1567917b07d3 *html/biogrid_hs.html
f09e157b8d0006ce20dc635b91f62bd6 *html/biogrid_mm.html
9490e431eb029b9948eb4ae9f33f6141 *html/findTRM.html
8ece0bba1caaf38f02482600ce7efac5 *html/getAnnotations.html
d9ac5c2cb8a98ab4c69182b64bd4c2af *html/getBiogridData.html
5f4a5250ae6d05673fdae02a4ea06a68 *html/getConcentricList.html
37afa65ef267f20ce97554bfa89415c8 *html/getLargestComp.html
e179c9e70be799889f241dd096b89880 *html/getMaps.html
52c6ce7c070ba38d06c24f365cb96013 *html/getMatrices.html
1c4b9cfe86abfe4c4d3edc10b4d2a731 *html/getMotifsFromEntrezgene.html
ff840b956d91a3da53b5e9fcaecf32f4 *html/getMotifsFromSymbol.html
2c013ac4af0dbb1a0af4ea70e2347da2 *html/getOrthologFromMatrix.html
8b14da72b30748318f373d2c6a283f1d *html/getOrthologs.html
4db13b77c0c8b68d1e5ac3bd073e07f8 *html/getOrthologsFromBiomart.html
e24a7afab1a57a8aef79bd02e1db3216 *html/getSequencesFromGenome.html
12b370afca784bf57babd3c00497a50a *html/getSimilarityMatrix.html
6ad552c41e98b93b854fffa41240f0e5 *html/getTFclass.html
3fda7c77f9ebddc68dfe5fcf7b006dd7 *html/getTFclassFromEntrezgene.html
7145fbb529abe963e2fe1dac6617963b *html/getTFterms.html
01bede708538f4f96924bef0d2be3321 *html/initBiomart.html
36344442e4a5ccd0ee63e4469c2489a6 *html/layout.arc.html
064efdcb343d90065d8f9240e0f28cb3 *html/layout.concentric.html
61a0f78f51ae8594fddc2a7edc5d27b3 *html/plotDegree.html
17bff84611c6586b75543f17e99d797c *html/plotGraph.html
79f186f54b95b881af978b085cf7ab1c *html/plotTRM.html
ef7563468fb31118e4b36cac208acf02 *html/plotTRMlegend.html
b6149bd49fd271c4548d107f9c17e6c0 *html/processBiogrid.html
2c52523277bb3d1116be72293edb768b *html/rTRM-package.html
b2fc0f18658b4dd93288a7104b46f098 *html/removeVertices.html
00829192dd29a69c6b30ad2e41b72fec *html/writeTRMreport.html
f41c2ce67d4c05dd947ee755befef8e9 *unitTests/test_findTRM.R
