R: Plot per Base GC Content by Position

plotGC-methods {qrqc}

R Documentation

Plot per Base GC Content by Position

Description

plotGC plots the GC proportion by position.

Usage

  plotGC(obj)

Arguments

obj

an S4 object of class that inherits from SequenceSummary (either FASTASummary or FASTQSummary) from readSeqFile.

Author(s)

Vince Buffalo <vsbuffalo@ucdavis.edu>

Examples

## Not run: 
  ## Load a FASTQ file, with sequence hashing.
  s.fastq <- readSeqFile(system.file('extdata', 'test.fastq', package='qrqc'))

  ## Plot Qualities
  plotGC(s.fastq)

## End(Not run)