| plethy-package {plethy} | R Documentation |
This package provides the infrastructure and tools to import, query and perform basic analysis of whole body plethysmography and metabolism data. Currently support is limited to data derived from Buxco respirometry instruments as exported by their FinePointe software.
| Package: | plethy |
| Version: | 0.99.4 |
| Date: | 2013-4-26 |
| Imports: | Streamer, DBI, RSQLite, methods, IRanges, reshape2, batch |
| Depends: | R (>= 3.0.0) |
| Suggests: | RUnit, BiocGenerics |
| License: | GPL-3 |
| biocViews: | DataImport, biocViews, Infastructure, DataRepresentation,TimeCourse |
| Collate: | BuxcoDB.R RetList.R buxco_db_v2.R dep_parser.R utilities.R |
| Packaged: | 2013-08-01 21:02:18 UTC; bottomly |
| Built: | R 3.0.1; ; 2013-08-01 21:02:29 UTC; unix |
Index:
BuxcoDB-class Class '"BuxcoDB"'
dbImport Import data into a BuxcoDB database
parse.buxco Functions for parsing Buxco respirometry data
plethy-package R framework for exploration and analysis of
respirometry data
buxco.sample.data.path Path to a sample Buxco output file
sample.db.path Path to a sample BuxcoDB database
Further information is available in the following vignettes:
plethy | plethy (source, pdf) |
Daniel Bottomly, Marty Ferris
Maintainer: Daniel Bottomly <bottomly@ohsu.edu>
www.buxco.com
tmp_db <- tempfile() bux.db <- parse.buxco(file.name=buxco.sample.data.path(), db.name = tmp_db) head(retrieveData(bux.db)) bux.db <- makeBuxcoDB(tmp_db) samples(bux.db) variables(bux.db)