5d1480a1ed87589765e31fc39bdc60d2 *CITATION
152b46cf4f1fc689f6240fee79d8dd54 *DESCRIPTION
d6d035437b092152c4111cec704b8c10 *INDEX
32c452f3ff7f892049c964ae956bd400 *Meta/Rd.rds
e00065855163c282e8adab2a116bf019 *Meta/features.rds
941b34065334ff5583a8f234a345b2ea *Meta/hsearch.rds
fcd94757040dbb31a8f397902545be7a *Meta/links.rds
95a798cc4762a658280bf44c249b57b4 *Meta/nsInfo.rds
160beea520c1bbc3ba047bca7d9829cc *Meta/package.rds
a98836d15ccea4144d2f1dcaa7640ff3 *Meta/vignette.rds
296eb705157250cdfc0e975416e60e13 *NAMESPACE
ad2526eb4d4bcabb6fc4b978e146d97a *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/paxtoolsr
db8b6422242f21eec755853d616391a8 *R/paxtoolsr.rdb
b9bf92c40b4211c5d11aa6c8f16606a6 *R/paxtoolsr.rdx
6d04e35e1764075bf908f2d025c220e4 *doc/index.html
e195539d6d2e01468da38522128eef89 *doc/using_paxtoolsr.R
15ac305c62f0b5ac05d2bdd02bb4ae8f *doc/using_paxtoolsr.Rmd
ba3057400c58bc80625cb24344b8d0f2 *doc/using_paxtoolsr.html
57094ba294cbb6fd68b5e557da2bad9b *extdata/10523676-compact.xml
54ab0ba22a9a4c822d8e575990c07331 *extdata/REACT_12034-3.owl
befab228b4b455dad710c9e1580e3fb1 *extdata/biopax3-short-metabolic-pathway.owl
2b5dfeb2ea9bfec99bd6dc4aba646b89 *extdata/dna_replication.owl
0023a3039a2f2658bb8c7885077cbbd5 *extdata/pathways.txt.gz
5a160fa41a75c7c756c2f727535d9d08 *extdata/raf_map_kinase_cascade_reactome.owl
d9802077f40d32d53da69dbbc116d215 *extdata/sif_color_code.txt
7ee52a8e1359ac99e0638777b1e0039e *extdata/tca_cycle.sif
584a03e3df7add5d446aa75e13fd94bf *extdata/test_PathwayCommons12.kegg.hgnc.gmt
8f438be882cf91b769b8ec2bbf4966e3 *extdata/test_PathwayCommons12.netpath.hgnc.gmt
befab228b4b455dad710c9e1580e3fb1 *extdata/test_biopax.owl
360e4ae65db08fb3a419806d3947666b *extdata/test_edgelist.txt
720f4a025c3d8906980885ca1ab33f8b *extdata/test_gsea.gmt
c93c59f7bd8a7d4aafcee2da89ace6f5 *extdata/test_gsea_1.gmt
01d9c9d6de8696250b58d6181392250e *extdata/test_sbgn.xml
7ee52a8e1359ac99e0638777b1e0039e *extdata/test_sif.txt
55bd7efeea626b96b3f332fc3e58d89f *extdata/test_sif_shortestPath.txt
a91fd992f44498a410ba6fb4af7496d0 *extdata/test_sifnx.txt
d4a9f3016f63dd1bddb9cce026810563 *extdata/test_sifnx2.txt
3e2b04768807dcec38b24914ebe7640c *extdata/test_sifnx_250.txt
42d032414c1a6fdeea0fb9e1719d6b6f *extdata/test_sifnx_sm.txt
1751e8c85e38542c5a19cfe17de88522 *help/AnIndex
791d561d892e017b8b5237e1f5ad7220 *help/aliases.rds
79f295bdff78f4050089d089574ea86a *help/paths.rds
2f7a9dfb18165373f9f5852d5f67b5a9 *help/paxtoolsr.rdb
ecfa72fd504392a0becf104808e7435d *help/paxtoolsr.rdx
59558a2a2848854388ce65c3d457c86c *html/00Index.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
6d0709e5fc461825d31165879baaf3b1 *html/addAttributeList.html
6415af4317553770727f594e09303e1d *html/convertDataFrameListsToVectors.html
adde9c2ca9db78dc8afe1f752873eb9a *html/convertSifToGmt.html
aa76410bd54989235866de4f4af1737f *html/downloadFile.html
56a809b037da5c58411c028b18a9eba5 *html/downloadPc2.html
97a50302a5174660cec151b2fe38feef *html/downloadSignedPC.html
cee137c9dc904b7a5b7bffd5da99ed6b *html/fetch.html
9891416f3d5586fed0a358de231f7303 *html/filterSif.html
e5a09b3f17143481d8ee12bf0b166357 *html/getCacheFiles.html
8f29a6d9148468420e6ac17b57131c5e *html/getErrorMessage.html
5b5a87f68b918716d901b9927f0f621c *html/getNeighbors.html
5e08ad2e19a68edfe044eac5e25d959a *html/getPc.html
c3a1296e159e15e7e8569044f24c968b *html/getPcDatabaseNames.html
701079d27933be34fa8e81960fbb4566 *html/getPcUrl.html
92cf53a44cf1e3a5b5e34fe4b6eb793c *html/getShortestPathSif.html
809c23aac41f720bd5e8ebc2565189d4 *html/getSifInteractionCategories.html
8b4904c223cdcc7d4ea423e5f14f9168 *html/graphPc.html
0c5c6ce7afc3e63a993ec5e7c34830ce *html/integrateBiopax.html
6d30f21714332195b451ce66ca789577 *html/loadSifInIgraph.html
55b0bc782817f6fd287dc8d00d38b25f *html/mapAttributes.html
0fdefafbe133ba83f0294dc6bfc63188 *html/mapValues.html
28c01a876ee77995a0b7cc36757538ed *html/mergeBiopax.html
b76513c470c98d4fa55202391615d0dd *html/pcDirections.html
8b2fb09a336aa5357a12b41c0a22a372 *html/pcFormats.html
6f1b99d61cc8e9bdf7b14da5e1074771 *html/pcGraphQueries.html
2fe0c988737ef5a4929b7b14816146f1 *html/processPcRequest.html
aa13f64706a193967e788b522987b24e *html/readBiopax.html
1203b205dbc7aa60815919379337dc56 *html/readGmt.html
eae694887b2487cece1cea6be5254bf6 *html/readPcPathwaysInfo.html
31a33504ed2cfd55fad3a4c4780725a6 *html/readSbgn.html
2e5958612bedf4291dbeecfd358488d2 *html/readSif.html
eb0f2705d35cf42a60ad5c66b53d9605 *html/readSifnx.html
3479a71e78044427bd525765fa3db67d *html/searchListOfVectors.html
98ec0b031d329f670099963c2b060212 *html/searchPc.html
fe508cb22e76898aa64ca65cb26c7723 *html/splitSifnxByPathway.html
1f699c4c876993319b04c96e50fcd147 *html/summarize.html
11bc5cbfb07c9e2eba3d90921f7956ee *html/summarizeSif.html
838471d5fcdd1f268cb05166023ca33c *html/toCytoscape.html
e021183dcdddfa948efaf5e5fb895f07 *html/toGSEA.html
ddc93df099a25ec974795dd093ee818e *html/toLevel3.html
e0ea9bb0f1d1751db90dbdb1744b2eb1 *html/toSBGN.html
07e3faeded2ed38a646263cef41cd694 *html/toSif.html
c697c6ba79c63f69317405895a3630ed *html/toSifnx.html
12633143e43da34086116c9de54c1baf *html/topPathways.html
7336818f02d9a9c16128f88a2bf57a18 *html/traverse.html
ab8268408c4cfeb2af384f090867efaa *html/validate.html
469d4a4267d7ecba44de6085eff76076 *ignore/convertIds.R
10b770f4bf107c3605328e762b505f57 *ignore/convertSifnxIds.R
ed2e681553db936079aa21796b1d0a89 *ignore/convertToDF.R
daaee6df65df384e7168e8c0577eceb5 *ignore/convertToDT.R
fb5b7f7caef5743309a18afbc9b3a2ad *ignore/convertToDataFrameWithListOfVectors.R
2aa64b9e72f77fb252234c525477376e *ignore/convertToPathwayList.R
33ea73ea94104e9e72ec060d2470d216 *ignore/del.txt
11a9c3f3e62bbb6f2385c98b78e3b469 *ignore/extractIds.R
0477d290cc88cb8983762f205f7f9ee0 *ignore/readSifnxSmall.R
7b853239982cd3f311b6bbb57e4fd28e *java/paxtools-4.3.1.jar
32810134c877218a48464ea8a46488eb *paxtoolsNotes.txt
