calculateSignificantLevel
                        Calculate significant level for hypo and hyper
                        conserved elements
demoForTransgenerationalAnalysis
                        The methylation information from samples over
                        three generations. Information for each
                        generation is stored in a 'methylRawList'
                        format (for demo purpose).
extractInfo             Extract the information specific to a
                        subsection of the permutation analysis
loadAllRDSResults       Load all RDS files created by the permutation
                        and observation analysis
loadConvergenceData     Load convergence information from RDS files
mergePermutationAndObservation
                        Merge the permutation results with the
                        observation results.
methylInheritance-package
                        methylInheritance: Permutation-Based Analysis
                        associating Conserved Differentially Methylated
                        Elements from One Generation to the Next to a
                        Treatment Effect
methylInheritanceResults
                        All observed and permutation results formatted
                        in a 'methylInheritanceResults' class (for demo
                        purpose).
plotConvergenceGraph    Generate a graph showing the convergence for a
                        permutation analysis
plotGraph               Generate a graph for a permutation analysis
print.methylInheritanceAllResults
                        Print a 'methylInheritanceAllResults' object
runObservation          Run a differential methylation analysis on
                        multi-generational dataset
runPermutation          Run all permutations on the specified
                        multi-generational dataset
samplesForTransgenerationalAnalysis
                        All samples information, formated by
                        'methylKit', in a 'methylRawList' format (for
                        demo purpose).
