9f26c8d5682d842cb5d723600f043e74 *DESCRIPTION
02d87f7e5c00da059abe10b27e259326 *INDEX
29a9012941a6bcb26bf0fb4382c5dd75 *LICENSE
a11f809ff6723bceb10ec37a89c0171f *Meta/Rd.rds
1d15b8cd6573641f81c4126b0438e9c2 *Meta/features.rds
31e8dbd0b6c6d4c4bc4d3f0e91c58720 *Meta/hsearch.rds
7ef10609fccb89d5f009e62e348493e5 *Meta/links.rds
11a9f8d78a0b73af6a7f7214155c4f47 *Meta/nsInfo.rds
3c83c36db1f8c6d18054388ad9b28012 *Meta/package.rds
cf2ca48ac45fde049e8aa8165f6b3d86 *Meta/vignette.rds
d16a08dcb01db5d9628367e8ce4e09a0 *NAMESPACE
cbc7f6cb31ce547c75224498369a95eb *NEWS
d6c68f1fe41ced6e98a766a3757313da *R/icetea
1c236e88428ccaacb70b0484aacb771a *R/icetea.rdb
65ee7f2d43ad378e127a4656a50e8978 *R/icetea.rdx
d81ababe1141aeea21b05124813d1e41 *doc/index.html
6e1a6d3738ac8b80ce34043df416c3fe *doc/mapcap_analysis.R
e9a45049b7fb37f1e1a3bec42fe17b45 *doc/mapcap_analysis.Rmd
4396558b2e564081553603b6d17646b3 *doc/mapcap_analysis.html
de8b916f9c226200f79c6f55feb85f55 *extdata/bam/embryo1.bam
91e831f3cd3c9f15a9cbc65a5256bdb2 *extdata/bam/embryo1.bam.bai
6f81004281be96947b0a7aec3fd708e9 *extdata/bam/embryo2.bam
d1a7d506ca48f8dfb57fdd27040e8f8f *extdata/bam/embryo2.bam.bai
6f6a1daa30ac3259ea3446b972abcb30 *extdata/bam/embryo3.bam
e9de33af380be5880cfac7aaec779d24 *extdata/bam/embryo3.bam.bai
aec2b788554ef9596a83903bf43de44e *extdata/bam/embryo4.bam
d8936a1cd8f09891df42ecc85f49424a *extdata/bam/embryo4.bam.bai
0c3c740f5e29282a59189275a59021fd *extdata/demult_fastq/embryo1_R1.fastq.gz
bb8a38293ae9c019a76ce993f1acd7ed *extdata/demult_fastq/embryo1_R2.fastq.gz
4b5ba8fca80d6db6eb9a806c1559e828 *extdata/demult_fastq/embryo2_R1.fastq.gz
260725b25ec4e7e437701e2e8f6a6537 *extdata/demult_fastq/embryo2_R2.fastq.gz
d454f40af936e291683c07234337c40b *extdata/demult_fastq/embryo3_R1.fastq.gz
2f4738c18f72cf9bbe1fbe8ac2bf3d2a *extdata/demult_fastq/embryo3_R2.fastq.gz
33836d593cf2d34191e6d9105c28a907 *extdata/demult_fastq/embryo4_R1.fastq.gz
66177ebfbe632de38653de30e626b104 *extdata/demult_fastq/embryo4_R2.fastq.gz
5892afab3371f7e667c4cd3ffa09f4c0 *extdata/filtered_bam/embryo1.filtered.bam
1d08ad34edc7c3dc9969510759247ac8 *extdata/filtered_bam/embryo1.filtered.bam.bai
2cd6075b990efdd8c87fae97df066e06 *extdata/filtered_bam/embryo2.filtered.bam
567e663f982757e1400a5dd3aefd6279 *extdata/filtered_bam/embryo2.filtered.bam.bai
76e22c135d7a09158387e33ca6d1ff9a *extdata/filtered_bam/embryo3.filtered.bam
3648e402b54371182c11737b521615b2 *extdata/filtered_bam/embryo3.filtered.bam.bai
f245afc12a17c7eff49f9d37f803ac72 *extdata/filtered_bam/embryo4.filtered.bam
c417c9d32ffbab6cfb1a11fc6996e409 *extdata/filtered_bam/embryo4.filtered.bam.bai
f9d63ca9f8a24353ec3282ace47b1a41 *extdata/mapcap_test_R1.fastq.gz
c501e7171f176d240536655600de70ed *extdata/mapcap_test_R2.fastq.gz
57e4621cc32dbcd98aac583bcbc152be *extdata/testTSS_grl.rds
2d25320c06c1ce89e17f5eac3b14db60 *extdata/testTSS_merged.bed
c438c1704a666d443a1e360b68a5cbfb *help/AnIndex
80eac299e95e87f178839e49def98dc3 *help/aliases.rds
313a4a2bd7d5f7bb6c289633684e2915 *help/icetea.rdb
101fd84736187bb451f60dd258e7a70b *help/icetea.rdx
6bd50e572c22b59f641fc3554ecc5f22 *help/paths.rds
24e34abd311141617a81b29eb6be43e8 *html/00Index.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
509d42983178d867d9afc12aaa2a67cf *html/ResizeReads.html
07e6cf700d2514e5fcf9c71df2e4fa39 *html/activeChrs.html
03981e744480d815b24f980b31832a13 *html/annotateTSS.html
596bd48d22c8034d1171f1c83c4e162d *html/check_capSet.html
45fa246a178cfeaf4750b4ffda923d17 *html/demultiplexFASTQ.html
dc00ea2f6471581da4f4160b39d38e32 *html/detectDiffTSS.html
e89af6c21a07e01108dbecbeffc70f62 *html/detectTSS.html
874257b1d25f900c01afe7000db67a72 *html/diffQCplots.html
1b7170d23305d23d825f55617394078f *html/exampleCSobject.html
9207bbb8b2f8e079a688d6a5cb36a663 *html/exportTSS.html
75a35d4c69e557c9884a006222347114 *html/filterDuplicates.html
7fc7fb29c9dbfdd2537cbc2473ace450 *html/filterDups.html
e3ce0cf6ab88137866ffba5227dc2b4f *html/fitDiffTSS.html
1e5212d57ba609fe38b69cc4ba03adea *html/getBamFlags.html
28c51d8ef22a87322901b670a1158931 *html/getChromBins.html
9e33eb2c8d3ebef5651ba39a8da3f8ad *html/getChromWindows.html
9126de8e176fada12f87394303275cf6 *html/getGeneCounts.html
2ab54b97d6261f43cbc2737a62b63e2a *html/getMCparams.html
5b4d01f5462a6be60a6e3278df25b876 *html/getNormFactors.html
e72b577385fb0fc2ea5546a81560f383 *html/get_newfastq.html
7c66b3b70d430bb800f2edb35af944f9 *html/getranks.html
3e837a75f588ab3538afb4b69573f317 *html/mapCaps.html
dd4d32bef855be7af4150c853754495c *html/newCapSet.html
8e5d84ad7c6ae22a5d8fff0b8c270ab7 *html/numReadsInBed.html
288422ebf1bfd89b18061ec861d36f26 *html/plotPrecision.html
246f402752d7414722bf16a37cbffa11 *html/plotReadStats.html
0718930d8dd32586369927fa3aee5b49 *html/plotTSSprecision.html
3492488f01779a2f7df10d6c72a15db5 *html/sampleInfo.html
f02bc851a56e823440465ab08e79bbd6 *html/splitBAM_byIndex.html
76514eb8b54c141ba0658bafc4c3bd6c *html/splitBAM_byRepindex.html
d7f990157d05dbed54ddb2ef6896897d *html/split_fastq.html
619877385eef478e76e03b73e8c79a9e *html/splitranks.html
c16fce901408481c1e227d1df511db6b *html/strandBinCounts.html
