.checkArgsSetDefaults   Check args and set defaults.
.mergeAndReturn         Merge results back to the query object and
                        perform additional post processing steps.
cleanColname            Clean the supplied string from punctuations and
                        spaces.
doAnnotation            Annotate a GRanges object using one of
                        annotation functions.
genes                   Sample RefSeq genes annotation
get2NearestFeature      Get two nearest upstream and downstream
                        annotation boundary for a position range.
getFeatureCounts        Get counts of annotation within a defined
                        window around each query range or positions.
getFeatureCountsBig     Get counts of annotation within a defined
                        window around each query range/position for
                        large annotation objects spanning greater than
                        1 billion rows.
getLowestDists          Get the lowest biological distance from the 5'
                        or 3' boundaries of query and subject.
getNearestFeature       Get nearest annotation boundary for a position
                        range.
getRelevantCol          Find the column index of interest given the
                        potential choices.
getSitesInFeature       Find overlapping positions/ranges that match
                        between the query and subject.
getUCSCtable            Obtain a UCSC annotation table given the table
                        & track name.
getWindowLabel          Generate a window size label.
hiAnnotator             Annotating GRanges objects with hiAnnotator.
makeChunks              Breaks two GRanges objects into chunks of N
                        size.
makeGRanges             Make a sorted GRanges object from a dataframe.
makeUCSCsession         Initiate UCSC genome browser session given the
                        freeze argument.
plotdisFeature          Plot distance distribution to a feature
                        boundary.
sites                   Sample Retrovirus Integration Sites data
sites.ctrl              Controls for Sample Retrovirus Integration
                        Sites data
