gwdf_2012_02_02 {gwascat} | R Documentation

## internal data frame for NHGRI GWAS catalog

### Description

convenience container for imported table from NHGRI GWAS catalog

### Format

A data frame with 17832 observations on the following 34 variables.

### Value

a DataFrame with (character) columns "Date Added to Catalog", "PUBMEDID", "First Author", "Date", "Journal", "Link", "Study", "Disease/Trait", "Initial Sample Size", "Replication Sample Size", "Region", "Chr_id", "Chr_pos", "Reported Gene(s)", "Mapped_gene", "Upstream_gene_id", "Downstream_gene_id", "Snp_gene_ids", "Upstream_gene_distance", "Downstream_gene_distance", "Strongest SNP-Risk Allele", "SNPs", "Merged", "Snp_id_current", "Context", "Intergenic", "Risk Allele Frequency", "p-Value", "Pvalue_mlog", "p-Value (text)", "OR or beta", "95 "Platform \[SNPs passing QC\]", "CNV"

### Note

In versions prior to 1.9.6, The .onAttach function specifies which data frame is transformed to GRanges. This is now managed manually.

### Source

http://www.ebi.ac.uk/gwas/

### Examples

    ## Not run:
    data(gwdf_2014_09_08)
    # try gwascat:::gwdf2GRanges on this data.frame

    ## End(Not run)

[Package gwascat version 2.20.1 Index]