save_gs {flowWorkspace}R Documentation

save/load a GatingSet/GatingSetList to/from disk.

Description

Save/load a GatingSet/GatingSetList which is the gated flow data including gates and populations to/from the disk. The GatingSet object The internal C data structure (gating tree),ncdfFlowSet object(if applicable)

Retrieve sample names by scanning h5 files from a GatingSet folder

Usage

save_gs(gs, path, cdf = c("copy", "move", "skip", "symlink", "link"), ...)

load_gs(path, h5_readonly = TRUE, select = character(), verbose = FALSE)

## S4 method for signature 'character'
sampleNames(object)

save_gslist(gslist, path, ...)

load_gslist(path)

Arguments

gs

A GatingSet

path

A character scalar giving the path to save/load the GatingSet to/from.

cdf

a character scalar. The valid options are :"copy","move","skip","symlink" specifying what to do with the cdf data file. Sometimes it is more efficient to move or create a symlink of the existing cdf file to the archived folder. It is useful to "skip" archiving cdf file if raw data has not been changed.

...

other arguments: not used.

h5_readonly

whether to open h5 data as read-only. Default is TRUE

select

an integer or character vector to select a subset of samples to load

verbose

logical flag to optionally print the versions of the libraries that were used to archive the GatingSet for troubleshooting purpose.

object

a GatingSet folder

gslist

A GatingSetList

See Also

GatingSet-class,GatingSetList-class

Examples

## Not run: 
	#G is a GatingSet
	save_gs(G,path="tempFolder")
	G1<-load_gs(path="tempFolder")

	#G is a GatingSet

	save_gslist(gslist1,path="tempFolder")
	gslist2<-load_gslist(path="tempFolder")

## End(Not run)
      ## Not run: 
        sampleNames(gsdir)
      
## End(Not run)
[Package flowWorkspace version 4.0.6 Index]