deg.up.down.info {fCI} | R Documentation

## find targets and their detailed expression changes

### Description

given expression matrix, find targets and their detailed expression changes

### Usage

    deg.up.down.info(wt.index.in.list, df.index.in.list, npci,
    use.normalization = FALSE, target.ratio = 0.5)

### Arguments

`wt.index.in.list` | a list of numeric values representing the column indexes for control samples
`df.index.in.list` | a list of numeric values representing the column indexes for experimental samples
`npci` | the object npci
`use.normalization` | a boolean value indicating if the normalization will be applied or not
`target.ratio` | a numeric value indicating the expected fold changes, i.e, 1.5

### Details

TBD

### Value

`expression ratio` | a dataframe of fCI gene expression ratios (folds) defined by control-control index and control-case index

### Note

TBD

### Author(s)

Shaojun Tang

### References

http://software.steenlab.org/fCI/

### See Also

TBD

### Examples

      print("TBC")

[Package fCI version 1.18.0 Index]