Package: exomeCopy
Type: Package
Title: Copy number variant detection from exome sequencing read depth
Version: 1.34.0
Date: 2017-04-25
Author: Michael Love
Maintainer: Michael Love <michaelisaiahlove@gmail.com>
Description: Detection of copy number variants (CNV) from exome
        sequencing samples, including unpaired samples.  The package
        implements a hidden Markov model which uses positional
        covariates, such as background read depth and GC-content, to
        simultaneously normalize and segment the samples into regions
        of constant copy count.
License: GPL (>= 2)
LazyLoad: yes
Imports: stats4, methods, GenomeInfoDb
Depends: IRanges (>= 2.5.27), GenomicRanges (>= 1.23.16), Rsamtools
Suggests: Biostrings
biocViews: CopyNumberVariation, Sequencing, Genetics
git_url: https://git.bioconductor.org/packages/exomeCopy
git_branch: RELEASE_3_11
git_last_commit: 9da198e
git_last_commit_date: 2020-04-27
Date/Publication: 2020-04-27
NeedsCompilation: yes
Packaged: 2020-04-28 02:54:55 UTC; biocbuild
Built: R 4.0.0; i386-w64-mingw32; 2020-04-28 16:46:00 UTC; windows
Archs: i386, x64
