import(methods)
import(S4Vectors)
import(IRanges)
import(GenomeInfoDb)
importFrom(utils, read.csv, data)
importFrom(AnnotationDbi, keys)
import(shiny)
import(BiocGenerics)
import(BiocParallel)
import(GenomicRanges)
import(SummarizedExperiment)
importFrom(SummarizedExperiment, colData)
import(GenomicFiles)
import(Homo.sapiens)
importFrom(Biobase, selectSome)

export(genemodel, makeErmaSet, stateProfile, stateProf,
   mapmeta, cellTypes, geneTxRange, csProfile, map2range,
   subsetByRanges)

exportClass("ErmaSet")
importFrom("rtracklayer", "import")

importFrom(ggplot2, ggplot, geom_rect, aes,
   facet_grid, theme, element_text, scale_y_continuous,
   scale_fill_manual, xlab, ggtitle, ylim)

