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| background | example data background |
| compMatrix | Make Comparison Matrix |
| datTraits | example data background |
| DEG | example data background |
| DEH | example data background |
| diffHet | Calculate Differential Heterogeneity |
| diffhetmatrix | example data background |
| epiBox | Make Boxplot from Comparison Matrix |
| epiMA | Make MA Plot |
| epiMap | Make Pheatmap from Comparison Matrix |
| epiNetwork | Construct co-epihet network based on DEH loci. |
| epiPathway | pathway annotation |
| epiPCA | Make PCA Plot from Comparison Matrix |
| epiTSNE | Make TSNE Plot from Comparison Matrix |
| jaccard | Jaccard score calculation between modules from two subtypes. |
| makeGR | Make List of GenomicRanges Object |
| moduleAnno | module annotation |
| moduledm | example data background |
| modulesil | example data background |
| moduleSim | module comparison between two subtypes |
| moduleVisual | Modules visualization and network topology |
| promoter | example data background |
| readGR | Make GenomicRanges Object |
| shannon | Shannon Entropy |
| sharedmatrix | example data background |
| splitn | The subtring extraction of a character vector |
| summarize | Summarize Data |
| userobj | GenomicRanges object generation |