Darken                  Darkens input colors by a set amount
Lighten                 Lightens input colors by a set amount
Simulate                Simulates what a colorblind person would see
                        for any dittoSeq plot!
addDimReduction         Add any dimensionality reduction space to a
                        SingleCellExperiment object containing bulk or
                        single-cell data
addPrcomp               Add a prcomp pca calculation to a
                        SingleCellExperiment object containing bulk or
                        single-cell data
demux.SNP.summary       Plots the number of SNPs sequenced per droplet
demux.calls.summary     Plots the number of annotations per sample, per
                        lane
demuxlet.example        demuxlet.example
dittoBarPlot            Outputs a stacked bar plot to show the percent
                        composition of samples, groups, clusters, or
                        other groupings
dittoColors             Extracts the dittoSeq default colors
dittoDimPlot            Shows data overlayed on a tsne, pca, or similar
                        type of plot
dittoHeatmap            Outputs a heatmap of given genes
dittoPlot               Plots continuous data for cutomizable
                        cells'/samples' groupings on a y-axis
dittoPlotVarsAcrossGroups
                        Generates a dittoPlot where datapoints are
                        genes/metadata summarizes per groups instead of
                        individual values per cells/samples.
dittoScatterPlot        Show RNAseq data overlayed on a scatter plot
dittoSeq                dittoSeq
gene                    Returns the expression values of a gene for all
                        cells/samples
getGenes                Returns the names of all genes of a target
                        object.
getMetas                Returns the names of all meta.data slots of a
                        target object.
getReductions           Returns the names of all dimensionality
                        reduction slots of a target object.
importDemux             Extracts Demuxlet information into a pre-made
                        SingleCellExperiment or Seurat object
importDittoBulk         import bulk sequencing data into a format that
                        dittoSeq functions expect.
isBulk                  Retrieve whether a SingleCellObject should be
                        treated as single-cell versus bulk
isGene                  Tests if input is the name of a gene in a
                        target object.
isMeta                  Tests if an input is the name of a meta.data
                        slot in a target object.
meta                    Returns the values of a meta.data for all
                        cells/samples
metaLevels              Gives the distinct values of a meta.data slot
                        (or ident)
multi_dittoDimPlot      Generates multiple dittoDimPlots arranged in a
                        grid.
multi_dittoDimPlotVaryCells
                        Generates multiple dittoDimPlots, each showing
                        different cells, arranged into a grid.
multi_dittoPlot         Generates multiple dittoPlots arranged into a
                        grid.
setBulk                 Set whether a SingleCellExperiment object
                        should be treated as single-cell versus bulk
