97d1cb27e8478d7ae4de59a2de8c86e7 *CITATION
9ec675fe35a7321dc1115372da56315f *DESCRIPTION
82aad66b16517c9991aa8cae64982337 *INDEX
d54467594f5877eee74328c0357d389f *Meta/Rd.rds
c8de5ae4fc029fc77b919754a3fda368 *Meta/data.rds
e00065855163c282e8adab2a116bf019 *Meta/features.rds
7a29c3f33a2437f2293b770600e5bedf *Meta/hsearch.rds
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410397ff57a67043b050ebd26af8e912 *Meta/nsInfo.rds
15193183bb269ad435844f6927cb583e *Meta/package.rds
19b18c02d03c9a58661c1c328ce7c08c *Meta/vignette.rds
e096c80e50b90520bbd9b8ac19805a4c *NAMESPACE
8ada7993428fbe4013f2164a0f29f319 *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/deepSNV
b84e23682f985657869cfbb22ac6d507 *R/deepSNV.rdb
4226e43111df6b6e6df019ff1ee58b03 *R/deepSNV.rdx
eb93e43e868cf6b00523766e2093961c *TODO
3ccecc236923abcec5bf3979f95058ec *data/HIVmix.RData
e5e59d311d41716d436bda6c12d6b6f8 *data/RCC.RData
44fe941582b98ed2fb74a2ff43bd04dc *data/counts.RData
8f473e99da6aea7893fbf4f0967161a5 *data/phiX.RData
39946182d2a7087db51be00e27bfe68e *data/pi.RData
a198b59b439c25594d85e0f8c8afc300 *data/trueSNVs.RData
b668e30fc1bc1b8c1f60ad1dbaff8772 *doc/deepSNV.R
79ea907278cca8011a87b7954bfc02ce *doc/deepSNV.Rnw
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db14767c6110ae0364ac7e64e94d5518 *doc/index.html
92e9aece07ac3612437ffc3be5c5823f *doc/shearwater.R
fc4e56aed626edbec5e35a7c0ac725b0 *doc/shearwater.Rnw
468dab137069d35f39c01547f758ffe4 *doc/shearwater.pdf
b17ebdace526e32bc2eaa51e7361ade4 *doc/shearwaterML.R
866271256074ead132c1e1225b663bac *doc/shearwaterML.Rmd
7fe641fa0a8b26b2ba0cbe78995a3cd5 *doc/shearwaterML.html
03adcf464008b8e2642cdb62807764d3 *example/deepSNV-example.R
f3dd841413d42161102b4b371b8b8e8f *example/shearwater-example.R
62e3352bca95588f9d1478ae36f1ed83 *extdata/control.bam
a3507164d703e922651e0e56236bc293 *extdata/control.bam.bai
89aadac87ae16155e52a1d89289428ae *extdata/deepSNV.vcf
965814f871f749638f925cc6f77d2a38 *extdata/shearwater.vcf
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6af3a3077f6d4ab936e1bb777ad8e910 *extdata/test.bam
74ceb014e38fe7f5111bc9d501889a5e *extdata/test.bam.bai
2df1a587bda6e4c60cc283dfd468cbaa *help/AnIndex
18b54fdbca512152d2e0dd1354e82b29 *help/aliases.rds
c275809c1a6cb411889be86f0e5fe058 *help/deepSNV.rdb
5b5f41da406fc0fdc9b290e046e25dec *help/deepSNV.rdx
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3803c3e707d00f6673c33ddf5360f725 *html/Extract-methods.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
eaa1259a04e4b2df8f248464321230d2 *html/RCC.html
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d66d9a3d10380d3df00f8754bcb7aade *html/bf2Vcf.html
158cd1025cd08b1ff022932e9d7b22ab *html/consensusSequence-methods.html
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742de35d1ac703c1ffb904b443894cce *html/coordinates-methods.html
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fb4be6c9306f8ce2854f1ebe425f7bb3 *html/estimateDispersion-methods.html
47d0d1b5bc3952442ed188ce77f1deff *html/estimateRho.html
96daedd3155700bdce5a2b7067399370 *html/loadAllData.html
d10af2bdb30e65d91ff667d61d8f3666 *html/makePrior.html
09766ffc80bd458df4efd79d4b39c9b1 *html/manhattanPlot.html
4c504794405d4aa62ce218c2aa6b3850 *html/mcChunk.html
9260f78228ee6c8a7a41f6b24d6ede24 *html/normalize-methods.html
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aa6e8bdbb6d06c5b617380b4a2620f0c *html/phiX.html
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ec4314ca769736d3dc94d780f80444d5 *html/qvals2Vcf.html
f8a3b38fe4b2a0a6f39e0bc4dd764fb4 *html/repeatMask-methods.html
716d0aea05ee160f2d404020a5f43297 *html/shearwater.html
8abd21db667bad663adad072c78ac413 *html/show-deepSNV-method.html
dd67cc181a7d52d9be26ebe2a6ff07b8 *html/summary-methods.html
044688f5d82cf5e375964954cf9f648d *html/test-methods.html
22b6497e1f8b3a58f58ed453dbb6ad21 *html/trueSNVs.html
2af73a64b572554398a446b302430522 *libs/i386/deepSNV.dll
192fe8ad97aa82a0857918635bb7c3c1 *libs/x64/deepSNV.dll
