770d52bdb5b9d73162c507d905ef1fe4 *CITATION
3e931baf11efcfbf4385b2f0d4ba977c *DESCRIPTION
3676782fd1acf778c036ae9d33b1790a *INDEX
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f51f28e08b4fc215e2f6955f2c2ae531 *Meta/features.rds
5990d7315711ae150cabab979e0bd384 *Meta/hsearch.rds
56c34709635afbbc2014a04325ecf863 *Meta/links.rds
431147043d5d804982360ba723e55900 *Meta/nsInfo.rds
5521aefee0a7d709a196271d9e3d9d82 *Meta/package.rds
a51b1567c9d0bef3dd8fe1604108fe56 *Meta/vignette.rds
454c57e8b9ffb54838242bb0d0fecae5 *NAMESPACE
f282409ccfe1ed93f8b22e080de26dbb *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/decompTumor2Sig
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487cf20deaa6e6d5ff3ffb16dd4c3e08 *R/decompTumor2Sig.rdx
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419643eed395a6d94816a6ae75cd9131 *help/decompTumor2Sig.rdb
5cbefe2ab48baba2a530b5c8c761eda8 *help/decompTumor2Sig.rdx
863f16c1e6a51751c5edbcd5f29d1806 *help/paths.rds
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d6e42c913f9043dfb85d1acc47335720 *html/QPforSig.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
6cf062993bee1712a751b38441cd963d *html/addBestSignatureToSubset.html
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5df5f02685dea17018620b7df4d7798b *html/buildSortedAlexandrovSignaturePatternList.html
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004a8ab948c9ad18295de76a9368ecf3 *html/computeExplainedVariance.html
d77bf61e76ae2493247b47aa2b974a37 *html/computeFrobeniusNorm.html
20e8bc75d47b80577ab47da8dbf0687c *html/computeRSS.html
37658167159e3c66cfb6ee79d01d3686 *html/convAlx2Shi.html
77ec01461d7059b327d25613c2d33847 *html/convertAlexandrov2Shiraishi.html
3178edb80fdfc8d674f88f5c99a1ff12 *html/convertGenomesFromVRanges.html
a93379494a65afa083add194af639b62 *html/decompTumor2Sig-package.html
dc75bc805a0ddc53d8307d1caa53f987 *html/decomposeTumorGenomes.html
4231869396c666765d57dbcb931d5ff0 *html/determineSignatureDistances.html
714b35e829dea8a4aeb2e2a5586a94f8 *html/determineTypeNumBasesAndTrDir.html
823bffb387cc1a1be6173746091b6b93 *html/downgradeShiraishiSignatures.html
4e4d17afce76adf61c3726e2bd634dae *html/evaluateDecompositionQuality.html
273a1503fb7df41e9d0842de31b6512f *html/getBestDecomp4Ksignatures.html
3c070b9d4b583cadece941209f8a98fd *html/getCountData.html
476a30f3a0ad9b3e6107de4641a6ac0d *html/getFeatVectList.html
176cc3803dfc6e36711ee3b20752717e *html/getGenomesFromMutFeatData.html
1853d066ce18aa398d59b286684530d9 *html/getNumFlankingBases.html
f6fa4d8d269d211081e0d9763a450a69 *html/getNumSignatures.html
444a326e14d3ea118d3081c6a86252bc *html/getSampleList.html
57d916f22a080d28d46a0bc097acc77b *html/getSigFeatDist.html
9b59fca4c97fe5475b7628a37d844d29 *html/getSigFromEstParam.html
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a049a60808dd7e04e5f83f61dae6b251 *html/haveTrDir.html
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34ba28c1f52c0aed55f4d3f6df546c2a *html/isSignatureSet.html
9f70f89c8f0997bedc0712a39ec830da *html/mapSignatureSets.html
0dd60d41cbdd8fa37dc96f095524d570 *html/plotAlexandrovModel.html
bc84bf47ea2b1438dc1ae7909f179f49 *html/plotDecomposedContribution.html
f33b62ffee5f5a2d7341fcc58d09324b *html/plotExplainedVariance.html
99b951ce89414bd6b22bd256b2960414 *html/plotMutationDistribution.html
405acb109c1abb72b0140034ab283d7e *html/plotShiraishiModel.html
fe2302db884308e09e8eef8c73fada0b *html/processMultipleSigSets.html
fd93155eb2220549ea5d51ab5854122d *html/readAlexandrovSignatures.html
c03962152587d0fd7266687025da796a *html/readGenomesFromMPF.html
0e46916f6a0d430ee05646e1a88b9240 *html/readGenomesFromVCF.html
23eb5fea6f9a4da979d31af46e16860e *html/readShiraishiSignatures.html
25a86f7af54abe9c1162cc9d6925e265 *html/roundIntegerSum.html
edf6488f5ed49cef4cdc4ab881133d05 *html/sameSignatureFormat.html
d75481af1752ccb2197830cd388298ba *html/setNames4ShiraishiTable.html
5d2b15e2aca2247e04a567d69078c9a3 *html/setNumFlankingBases.html
41583c1a4e5a70a58c5e537fa5ea6aab *html/setSigFeatDist.html
a204d3e6934b14df924fee7ea38bfb29 *html/setSigType.html
48e5d9b5637b0562f2d68d02d1c5ec46 *html/setTrDir.html
94d55d512a9ba36caa9b7df079bae19f *license/COPYING
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