R: Check a list or a 'compData' object for compatibility with...

checkDataObject {compcodeR}

R Documentation

Check a list or a `compData` object for compatibility with the differential expression functions interfaced by `compcodeR`

Description

Check if a list or a compData object contains the necessary slots for applying the differential expression functions interfaced by the compcodeR package. This function is provided for backward compatibility, see also check_compData and check_compData_results.

Usage

checkDataObject(data.obj)

Arguments

data.obj

A list containing data and condition information, or a compData object.

Author(s)

Charlotte Soneson

Examples

mydata.obj <- generateSyntheticData(dataset = "mydata", n.vars = 1000, 
                                    samples.per.cond = 5, n.diffexp = 100)
checkDataObject(mydata.obj)