R: Extract coordinates from fitted object

extractCoords {combi}

R Documentation

Extract coordinates from fitted object

Description

Extract coordinates from fitted object

Usage

extractCoords(modelObj, Dim)

Arguments

`modelObj`	The fitted model
`Dim`	the required dimensions

Value

A list with components (matrices with two columns)

`latentData`	The latent variables
`featureData`	The feature parameters
`varData`	The variables

Examples

data(Zhang)

#Unconstrained
microMetaboInt = combi(
list("microbiome" = zhangMicrobio, "metabolomics" = zhangMetabo),
distributions = c("quasi", "gaussian"), compositional = c(TRUE, FALSE),
logTransformGaussian = FALSE, verbose = TRUE)

    #Load the fits
load(system.file("extdata", "zhangFits.RData", package = "combi"))
extractCoords(microMetaboInt, Dim = c(1,2))

[Package combi version 1.0.0 Index]