computeVariability {chromVAR} | R Documentation

## computeVariability

### Description

function to compute overall variability of motif sets across samples

### Usage

    computeVariability(object, bootstrap_error = TRUE, bootstrap_samples = 1000,
      bootstrap_quantiles = c(0.025, 0.975), na.rm = TRUE)

### Arguments

`object` | output from `computeDeviations`
`bootstrap_error` | compute bootstrap confidence interval
`bootstrap_samples` | number of bootstrap samples to take
`bootstrap_quantiles` | quantiles for bootstrap
`na.rm` | remove NAs? default is true

### Value

data.frame with columns for name, variability, bootstrap lower bound, bootstrap upper bound, raw p value, adjust p value.

### Examples

    # Load very small example results from computeDeviations
    data(mini_dev, package = "chromVAR")
    variability <- computeVariability(mini_dev)

[Package chromVAR version 1.10.0 Index]