gtfToExons              Convert GTF file to exon location file
makeBranchpointWindowForExons
                        Make branchpoint window regions
makeBranchpointWindowForSNP
                        Makes a branchpointer formatted GRanges object
                        from refsnp ids
plotBranchpointWindow   Plots branchpointer predictions
predictBranchpoints     Predict branchpoint probability scores
predictionsToSummary    Convert SNP branchpoint predictions across the
                        branchpoint window to an intronic summary
readQueryFile           Read a query file
