75e0384ec2ce7dcda69588fc00281a30 *DESCRIPTION
4b39c6f6c5c1cae40851f9bd7aad3d2a *INDEX
a3c67c50fd14f5b6b0961b30a516aad8 *Meta/Rd.rds
38eac93460f2b42a2f6d7b02342c0305 *Meta/data.rds
e00065855163c282e8adab2a116bf019 *Meta/features.rds
078b4b296b5acd0b6f94e6a36d0d81c3 *Meta/hsearch.rds
4766ebf595747dda4b3f6c4c22cf9d0d *Meta/links.rds
693b582281a528411aac31b960e3ba1c *Meta/nsInfo.rds
252c60affdfda6ded605ffe15a240924 *Meta/package.rds
c6f8fb1828f5b3103bd37e9e4a77dbc7 *Meta/vignette.rds
4a65cdeafd7d8d2c863c9912b6380945 *NAMESPACE
f77e5430569c792149b7596240caa1e5 *NEWS.md
ebf0fc819595d631b8bf280c4b049940 *R/biscuiteer
89e4b5c619f963f81c2682c0ea0f8c7a *R/biscuiteer.rdb
41562ae6ad08c0a394bc228f4ec8fa43 *R/biscuiteer.rdx
0adde9c30a80413435c5883fdbaf18ea *data/ENSR_subset.hg19.rda
b1355be5ec9d87afa92c617a211ceb9e *data/ENSR_subset.hg38.rda
d3b3899ba06144339ee83ba8fe4ba858 *data/GRCh37.chromArm.rda
ea35f87b69e6b1eee240462d3de1e647 *data/GRCh38.chromArm.rda
e9432085dba6233b4a53865985598fb2 *data/H9state23unmeth.hg19.rda
f942e9a779658c0d196a80bf2eb49a33 *data/H9state23unmeth.hg38.rda
bdbeb2f653476bd1c3812add4b1cfc0e *data/HMM_CpG_islands.hg19.rda
515534a7e5eb261dd9fd0e333d61b33c *data/HMM_CpG_islands.hg38.rda
3279b939a7b53ad38387447c4c9d2313 *data/clocks.rda
82f9894660885e9d11cba4aed146b513 *data/datalist
6869680f11325e482806c86b47151c77 *data/hg19.chromArm.rda
247bc9d7284208061b82dddc841ae191 *data/hg38.chromArm.rda
b6e4e4db1ef5838a88d1510221c32777 *data/seqinfo.hg19.rda
cd9fd1521718f84dc72b8ce64b9a5d7f *data/seqinfo.hg38.rda
d1226704e76cb1fcc92b52443320b337 *data/seqinfo.mm10.rda
e61cf45e8cf000c4535908bde3406841 *doc/biscuiteer.R
f98e9c421f04bf730047078e3e80f71f *doc/biscuiteer.Rmd
fc1371643f59ba56579e249a8ccd83da *doc/biscuiteer.html
cdc7f49c14754d18b93edd50d3ed1529 *doc/biscuiteer.md
fd59ea6d8b1580f17f285940a639daa9 *doc/index.html
31048ae3d0a6b7953760336e638b86b7 *extdata/MCF7_Cunha_chr11p15.bed.gz
1971254c2e0f420e04d8119174949b1e *extdata/MCF7_Cunha_chr11p15.bed.gz.tbi
57b14e8560ff1cde06b7578b688f20af *extdata/MCF7_Cunha_chr11p15_shuffled.bed.gz
d6ff9139c2cd7728430fa6d969fe124a *extdata/MCF7_Cunha_chr11p15_shuffled.bed.gz.tbi
61309ab54074516a5b2973f632687741 *extdata/MCF7_Cunha_header_only.vcf.gz
d80cf4090040c37259bf284f3249834b *extdata/MCF7_Cunha_header_only.vcf.gz.tbi
cfb4a86e6b86ced7a5bce1e63ac54a11 *extdata/MCF7_Cunha_shuffled_header_only.vcf.gz
7b2b4a379f80df3f17e729eb04075171 *extdata/MCF7_Cunha_shuffled_header_only.vcf.gz.tbi
45755b3aa6c2f33303c0aac5abc2326c *help/AnIndex
f1d5e5089de18812af233a2f6e1f087d *help/aliases.rds
242b25b8e08bfc4210277758f984ce91 *help/biscuiteer.rdb
62f1fbaa941b12d5ec3f9c05f3f571f7 *help/biscuiteer.rdx
8b45666fd87ea45d048d22dc9a082e78 *help/paths.rds
7b81b8c17a3b7491c02c35bee606f37b *html/00Index.html
ced5ef7a8b7e0139430caeba9b575c6c *html/CpGindex.html
a96f26868e51e6955a5afe877ac7bf20 *html/ENSR_subset.hg19.html
0b4707afed7dac30cdde9395f5156dfc *html/ENSR_subset.hg38.html
b32faad206a068c5c129eb4458b7a7d2 *html/GRCh37.chromArm.html
4434df8d498fed84c5727a8a7d74d2da *html/GRCh38.chromArm.html
9f3e62d2f5aa705ebd531be46fe91867 *html/H9state23unmeth.hg19.html
9a383779671822afbe94c787ba79fbd5 *html/H9state23unmeth.hg38.html
910268cf2ef151fec28a051f8f1ed4d9 *html/HMM_CpG_islands.hg19.html
a1afb766ea3e14ee672010376b3d645c *html/HMM_CpG_islands.hg38.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
18b65e7176f7449e3de9cb2c1779c40b *html/RRBSeq.html
55542246ce0bd520d16ea69820a004d5 *html/WGBSage.html
899b50e82f224df83bfdb4c50f4970a3 *html/WGBSeq.html
490f34a614a585fefe38e671bc7fd6e4 *html/atRegions.html
25fc84835d61d27d7097fc82ec499c26 *html/binCoverage.html
15010450d15ca3e629ec37c031cb9098 *html/biscuitMetadata.html
bfae3357a9ec54c6fca38ba1d2ad3934 *html/biscuiteer-methods.html
4299ca8f10218e217bc9ff18f194a9bc *html/biscuiteer-package.html
b89193a06b36516f9db9ef155c3e9075 *html/byChromArm.html
c28fc8b7140edb89e8257de8c25f29a8 *html/byExtremality.html
0ecf91b9bed1adf9768a6d368d3ff24c *html/checkBiscuitBED.html
4263836a25813b659dee557454b50954 *html/clocks.html
5826fe79e547e948a6b6a20a571d30af *html/condenseSampleNames.html
e2eba40a209a3d9407c0d62e771098ac *html/extremality.html
3ca653059b5ac14945ca1bf76a73b58a *html/fexpit.html
f0184b69ef79d5b5f6d4686396b5057e *html/filterLoci.html
002e3ac85accfd596c9070764122b6fd *html/fixAge.html
bce46cfd7c656a14183064662744f954 *html/fixNAs.html
df2ba84bde4344d30f0cc0a491863262 *html/flogit.html
0ad135f0135f1bd963abbf9683de644e *html/getClock.html
4003a79a3cc6ccbd7adde9fac6d9c1c0 *html/getLogitFracMeth.html
fd7affbbb9fb92633b1ac8d258431f71 *html/grToSeg.html
e43abd58932c8240a734cbf9e3208abb *html/hg19.chromArm.html
33bce0d907d7f23cb7580e8e280f7e4a *html/hg38.chromArm.html
19e8ac0f1896093bb6c0dfce4ccd40cc *html/makeBSseq.html
aebeb1039dc4eb8edb0d2716c87cec1f *html/readBiscuit.html
590898d84e0ce9b4da901212f3931fab *html/segToGr.html
406009ad0eecd76c9059c9e0c94c1e47 *html/seqinfo.hg19.html
fd77eabe6678be82788f396d56bb6534 *html/seqinfo.hg38.html
82aab02343b3cb84ccc3820d799b3fec *html/seqinfo.mm10.html
757b347c48a43c2cda14f649fe14433e *html/simplifySampleNames.html
21c2bcd5487f6f22bfe38b56ed3c1549 *html/summarizeBsSeqOver.html
99db73ad70e782ff6a0c98282acede6e *html/unionize.html
39c1310b90fe5a0de192833a7df9f3d7 *scripts/clocks.R
73a881932be92dd2a1594cbef6303e4a *scripts/extdataDescription.md
62b582af8bfe316884406f04f44d7606 *scripts/genShuffledMCF7CunhaBed.py
