R: Differential Expression for 'TimeSeriesExperiment'

differentialExpression {TimeSeriesExperiment}

R Documentation

Differential Expression for `TimeSeriesExperiment`

Description

Getter method for differentialExpression slot of a TimeSeriesExperiment. The slot is a list with differential expression results possibly containing elements named 'timepoint_de', and 'trajectory_de' computed with timepointDE and trajectoryDE functions.

Usage

differentialExpression(object, ...)

## S4 method for signature 'TimeSeriesExperiment'
differentialExpression(object,
  name = NULL)

Arguments

`object`	a `TimeSeriesExperiment` object.
`...`	argiments to other functions.
`name`	one of elements of 'differentialExpression' slot: 'timepoint_de', 'trajectory_de'. If NULL, all elements are returned.

Value

a data.frame or a list of data.frames

Examples

data("endoderm_small")
endoderm_small <- trajectoryDE(endoderm_small)
head(differentialExpression(endoderm_small, "trajectory_de"))