R: Collapse data over replicates.

collapseReplicates {TimeSeriesExperiment}

R Documentation

Collapse data over replicates.

This function aggregates the data over replicates, i.e. returns collapse data for each group and at each time point.

collapseReplicates(object, FUN = mean)

`object`	A `TimeSeriesExperiment` object
`FUN`	the aggreagate function. Default is mean

Returns TimeSeriesExperiment object after collapsing over replicates. Collapsed data is stored sample.data.collapsed and data.collapsed slots.

data("endoderm_small")
endoderm_small <- collapseReplicates(endoderm_small)
assayCollapsed(endoderm_small)[1:10, 1:6]

[Package TimeSeriesExperiment version 1.6.0 Index]