77a5ab20885f17af0e5a2668c6dcac74 *CITATION
46c68711ea156e94d3efba36002392c7 *DESCRIPTION
2dba24ee3b6e24150a397948d3793149 *INDEX
84dcc94da3adb52b53ae4fa38fe49e5d *LICENSE
393354f40516669612b25ab84db7003a *Meta/Rd.rds
3048db1cced48b453edace66382adb8d *Meta/demo.rds
e00065855163c282e8adab2a116bf019 *Meta/features.rds
c18435654be11b0d7b3edbbbcb857ef4 *Meta/hsearch.rds
47403c928bf93dd1b1f09897976ee1d6 *Meta/links.rds
f43387b9adb8909e50cd8b5dd696b214 *Meta/nsInfo.rds
98b051c0211993c3ae9d916c7eacc864 *Meta/package.rds
72393f4b4dc7170cebd9065752665f3a *Meta/vignette.rds
9a2ebaabe285548070bebd9b54eab1b3 *NAMESPACE
75ad17b929a0c6c28223dfb29fd573a2 *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/TSRchitect
ec962449c706d750e15f28e668f2e373 *R/TSRchitect.rdb
fa6f1aa90ba6f943312a1789865059bc *R/TSRchitect.rdx
f5805dadffd5152e2619ae35a149649b *doc/TSRchitect.R
d2f65ef90048d17d5873c95483505b3c *doc/TSRchitect.Rmd
274b0877beb198fa99f899e818e48fc8 *doc/TSRchitect.html
bfd0a584adfb01c099c9d928101d9dfc *doc/TSRchitectUsersGuide.Rmd
10f10cd213103b95ce07389cfbec4874 *doc/TSRchitectUsersGuide.html
20067a1a3337f5222b7f21636189eccc *doc/TSRchitectUsersGuide.pdf
c6e15466d7cfe95ef57e9e9d1852885b *doc/index.html
034ea19993f7186c373194e0bc35e371 *extdata/AtEST.gsq
4bbc04bf3fa7d448ce5d9f0583e35499 *extdata/Perl/gsq2bed.pl
e17ffceede2bc48f9a5a3512a0700427 *extdata/bamFiles/sample1-rep1.bam
87621f78e1bfdf458aa25dcb54d4b687 *extdata/bamFiles/sample1-rep2.bam
398d997aa03940f301ecbac764d502ac *extdata/bamFiles/sample2-rep1.bam
818e50d63d16565c4ddc49a1a86a082a *extdata/bamFiles/sample2-rep2.bam
46892c21c3bcd179fad12c207800b9ea *extdata/bedFiles/sample1-rep1.bed
66fd74686aad44f5b11a0e3f69dba67f *extdata/bedFiles/sample1-rep2.bed
dec053f1f06ebd6b3d914ed8aebfa6f0 *extdata/bedFiles/sample2-rep1.bed
dcd74ac1a988e26a02be803f3400d0a3 *extdata/bedFiles/sample2-rep2.bed
d4c91c62eb8e92b482cedbf26d2785cc *extdata/gencode.v19.chr22.transcript.gff3
0aa19e9df72ce94539e5b2916395fc70 *extdata/tssObjectExample.RData
596744bdffb554f522c15e1f21b34b75 *help/AnIndex
4c83577bd97b4e963ac9d35cf72e8f9e *help/TSRchitect.rdb
018d668fae257534b95977945aa373ce *help/TSRchitect.rdx
bd8fa52087fb75d80b4becca4882b0ee *help/aliases.rds
78e3a6a1ff04e8b6c4fe3564b80e9bfa *help/paths.rds
29b8d0449a30005c78ffd435076cab32 *html/00Index.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
97fd2bf42d2ac9171f72369013892c3b *html/TSRchitectUsersGuide.html
76c7f1b65d245f9be4f3ecb1d0f63db1 *html/TSRmshapeIndex.html
aaeab27f367c9130ee15d99f11525343 *html/TSRshapeIndex.html
5834812a368dd425340321ecb768f403 *html/addAnnotationToTSR-methods.html
99cfb5a6e4248e2694a1bac79aa72230 *html/addTagCountsToTSR-methods.html
d2e96071bd697fdf081f11f64e3907a7 *html/bedToTSS-methods.html
74df0479792935125449fc8c55dd2550 *html/createSummarizedExperiment-methods.html
7cf3c901602c4c4087ffffcc2cc235fb *html/detTSR-methods.html
4f5c0f3a832c0b45c29c47f06b68d0e5 *html/determineTSR-methods.html
c1f846d7667565c86f240409cb484739 *html/getBamDataFirstRead-methods.html
49ffeb17bda0998d0af691e6ab7d0a10 *html/getBamDataLastRead-methods.html
ed628f7bb7065ee00001ff1fb59aa391 *html/getFileNames-methods.html
7e35f0be0d86494cb772b49dac5ed5d0 *html/getTSRdata-methods.html
2dfa6b2b4b285c356b170d2889f1e13e *html/getTSScountData-methods.html
c7009064b5cef1fbf284cb7cd45777a1 *html/getTSStagData-methods.html
3e76fe6ac8e39925aad81785230e4b97 *html/getTitle-methods.html
8fac0b1d62d81511bb4b60e9616a8b7f *html/gsq2bed-methods.html
c3bb442d91f09cb08a4c4bb364deaa26 *html/importAnnotationExternal-methods.html
b4c1b3ee60140ab8774b8f49508d7799 *html/importAnnotationHub-methods.html
587185a3437141374553c7264a71e412 *html/inputToTSS-methods.html
c8a565b2ca0d0a5f99111c4db32f6686 *html/loadTSSobj-methods.html
8dcb6ea126231620ba43fbf2d063c70b *html/makeGRangesFromTSR-methods.html
116e73d9f6861f16e8ab573ea8c9e6cf *html/mergeSampleData-methods.html
0c13e480e472265914536b4aacdbdec5 *html/prcTSS.html
3e8d5bd52b4c784b161e43d1f7220a0d *html/processTSS-methods.html
6d6c0dca0c36823dec9482d7649fb54b *html/tagCountTSS.html
1c9b9943b208d0d23fdaef4b30ebd476 *html/tsrCluster.html
f759ff615443cd892d5856e4e363beee *html/tssArrayProperties.html
7da9f9c9768fd694be9ca15e082be03e *html/tssObject.html
341439121669c76450465ec2979fcb2c *html/writeTSR-methods.html
25269453828783f9c60fc9b67273b5fe *html/writeTSS-methods.html
