Bootstrap_LOOCV_LR_AUC
                        Bootstrap on Leave-one-out CV with Logistic
                        Regression.
LOOAUC_simple_multiple_noplot_one_df
                        Perform Leave-one-out CV with Logistic
                        Regression.
SignatureQuantitative   Use logistic regression and bootstrap LOOCV to
                        evaluate signatures.
TBSPapp                 Run the TBSignatureProfiler Shiny application.
TB_hiv                  An example TB dataset with TB/HIV data.
TB_indian               An example TB dataset with Indian population
                        data.
TBcommon                A list of published TB signatures, using
                        author-given names.
TBsignatures            A list of published TB signatures.
bootstrapAUC            Bootstrap the AUC and conduct T-Tests for a
                        collection of signatures.
common_sigAnnotData     Annotation information for published TB
                        signatures.
compareAlgs             Compare scoring algorithms on a single
                        signature via heatmap or boxplot.
compareBoxplots         Create a comparison plot of boxplots for
                        bootstrapped AUC values.
deseq2_norm_rle         Normalize gene expression count data.
distinctColors          Generate a distinct palette for coloring
                        different clusters.
mkAssay                 Add SummarizedExperiment assays to the data
                        structure.
plotQuantitative        Create a boxplot using logistic regression and
                        bootstrap LOOCV to evaluate signatures.
runTBsigProfiler        Run TB gene signature profiling.
sigAnnotData            Annotation information for published TB
                        signatures.
signatureBoxplot        Plot a boxplot of signature genes.
signatureGeneHeatmap    Plot a heatmap of a single signature score with
                        individual gene expression levels.
signatureHeatmap        Plot a heatmap of signature scores.
signatureROCplot        Create an array of ROC plots to compare
                        signatures.
signatureROCplot_CI     Create an array of ROC plots with confidence
                        interval bands to compare signatures.
tableAUC                Create a table of results for t-tests and
                        bootstrapped AUCs for multiple scored
                        signatures.
