applyttest	applyttest
applyttestPep	applyttestPep
buildSpectraLibPair	buildSpectraLibPair
canonicalFormat	canonicalFormat
checkQuality	checkQuality
cleanLib	cleanLib
coverage	coverage
cv	cv
fdr.crit	fdr.crit
getFdrBins	getFdrBins
ionCorGS	ionCorGS
medianNorm	medianNorm
mlr	mlr
mlrGroup	mlrGroup
mlrrep	mlrrep
outputLib	outputLib
plotAll	plotAll
plotDensities	plotDensities
plotErrorBarsLines	plotErrorBarsLines
plotRelativeDensities	plotRelativeDensities
plotRIICor	plotRIICor
plotRTCor	plotRTCor
plotRTResd	plotRTResd
quantification.accuracy	quantification.accuracy
readLibFile	readLibFile
reliabilityCheckLibrary	reliabilityCheckLibrary
reliabilityCheckSwath	reliabilityCheckSwath
swath.means	swath.means
