94a64e383c91bb144859911bc7d94908 *DESCRIPTION
ff0c58e099d324882b6366f6e563cdf8 *INDEX
f335133d305ce62e9387f62ea8c6d667 *Meta/Rd.rds
e00065855163c282e8adab2a116bf019 *Meta/features.rds
e8e822ded41b8148277de1b99da7ec8f *Meta/hsearch.rds
ffd2f947bdac24373df5d8c05bb08551 *Meta/links.rds
847ab44ea4bbd0b106ffd4f63ade48e9 *Meta/nsInfo.rds
e28130b5ec2b1f3c77f63e7fa2b78ead *Meta/package.rds
bc54fe648efb11d64518adf3b243e57e *Meta/vignette.rds
24e9c08932a70f2075092cde33a08806 *NAMESPACE
188521dc51287dda57889dd35ef026d4 *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/StructuralVariantAnnotation
b42a2c38754fbd7eddb99d829f2c4ad7 *R/StructuralVariantAnnotation.rdb
0f5b1f2f4c8ef189d369aab41dac72cc *R/StructuralVariantAnnotation.rdx
1891dbf87ca9fce1945b16dd64840348 *doc/index.html
84040ad0382d4c1063764ca01a8f3a22 *doc/vignettes.R
613381b334bc5080887c5b3757c55ec2 *doc/vignettes.Rmd
3344752cf69b49ba34a4adc36c2ee631 *doc/vignettes.html
12ee44ba494bc06baa7369469700f7c8 *extdata/COLO829T.purple.sv.ann.vcf.gz
683caf164bb74e29552f0177e876add2 *extdata/breakdancer-1.4.5.vcf
feeaad3d5ec237cff7761c7d04431b78 *extdata/breakend.vcf
2ab83f00d360b12f5cece00c82e5c0b0 *extdata/crest.vcf
c972e2f7fde3e39dcafa159e96732617 *extdata/delly-0.6.8.vcf
351814da6dd730c526944416ce048706 *extdata/gridss-missingPartner.vcf
4927fa10b4842cfa4ba38c9d5fc7d8c8 *extdata/gridss-na12878.vcf
cc82ed7e26d2d0490714f9c52882a605 *extdata/gridss.bedpe
5e5ae0f5c15eef2943d75b9168031c47 *extdata/gridss.vcf
8cd93102afc733e1f81cd323eacf21c5 *extdata/manta-0.29.6.vcf
1cf2f3eda533b5cd761a71a78cac7ad7 *extdata/manta-1.1.1.vcf
cb53d99797872f13ba066e3551a6d3d2 *extdata/multipleAltSVs.vcf
7b54dafc7a0b36ddaa85c861e745b8f9 *extdata/na12878_chr22_Sudmunt2015.vcf
ebbaf305e07754a431a7200b122a8561 *extdata/na12878_chr22_crest.vcf
63206a566ee14bcb7fedd85e214a9f10 *extdata/na12878_chr22_hydra.vcf
489550bafad9c87b6441721b379966a6 *extdata/pindel-0.2.5b6.vcf
fbb8e101fb854f488c4f26df2b490451 *extdata/simple.vcf
a489a6898e1a6c617b09baa2f0fbc037 *extdata/tigra-0.3.7.vcf
a0a6d82bbcd08187186af68b4c339819 *extdata/unnamed.bedpe
27f53f9124a138ed7da6181719f34881 *extdata/vcf4.2.example.sv.vcf
79afebcf08a7447657a4e9feef4f1496 *help/AnIndex
ae34571b1b1cde4d0b85dd5d57db3374 *help/StructuralVariantAnnotation.rdb
36c22b4753519aede3969d1ac5251ba1 *help/StructuralVariantAnnotation.rdx
7d056286c0f1f862552ae540ee0d6cd2 *help/aliases.rds
8a8c33244b98040167726b29683f2831 *help/paths.rds
08ece5d2f76b400768c2cd643d5379a2 *html/00Index.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
94468733c6f7ea8e634ca3cd5955cb28 *html/StructuralVariantAnnotation.html
ef6bcaaf3dffb1d136d4f78c50f87900 *html/align_breakpoints.html
4eb11e42ba2350ac60912641b1034940 *html/breakendRanges.html
bde7e6c18a7e51d95887b157dab4dab8 *html/breakpointGRangesToVCF.html
5406d20360511d3f972bb5d14c34a76e *html/breakpointRanges.html
e1ca70bd32616b9b1edb14a70fea9f8f *html/breakpointgr2bedpe.html
df45392b2301accce9ad79dd83570da0 *html/calculateReferenceHomology.html
e424725ea12c1a6aa0e1485030941321 *html/countBreakpointOverlaps.html
963037463870ca7db606856e4705772a *html/dot-constrict.html
bca7d87342c31a68937db4d7dc1724b1 *html/dot-isSymbolic.html
efe45ba78b07c8630d727b44269e0543 *html/dot-pairwiseLCPrefix.html
b9f7d1f63fd61e7db1c1f9f6dd7ec505 *html/dot-svLen.html
4f6018587bc522097dcf666c189057da *html/dot-testfile.html
79aa7d60fe1d80c3f17fc3451a719936 *html/dot-testrecord.html
b77173c08cd47d00adb2626dcf882576 *html/dot-toVcfBreakendNotationAlt.html
70c4e712711b2c5676cbdabdf9f032eb *html/dot-unXStringSet.html
7c81885196d2687603aab906c1f08415 *html/elementExtract.html
bea964a02b7bcd99c28cc14ce6ac4000 *html/extractBreakpointSequence.html
248e5f80646c146e553ef22a96527e80 *html/extractReferenceSequence.html
f26bf4d5668e53cc1ab6442365a353e7 *html/findBreakpointOverlaps.html
16e9e13fbb9b2c54787b4df69dc7c795 *html/findInsDupOverlaps.html
ad6094d107f3e6c98c947178c12b167c *html/grapes-na-grapes.html
883e13bbbf2431390a96f1588bb0569e *html/grapes-null-grapes.html
78643eace85c556213ad7a1561a15fbd *html/isStructural.html
0e8b5d76a7bbc635001286aac894feb9 *html/isSymbolic.html
3ef15b32e440897bd848f2cd3e8ccb52 *html/pairs2breakpointgr.html
b5721d94ed36b814ff74b90f8a8cb481 *html/partner.html
23b039484880af9645f394ac65e185f4 *html/simpleEventLength.html
b195397792b470300d4f0d544e2f3261 *html/simpleEventType.html
