downloadSbgnFile {SBGNview}R Documentation

Download pre-generated SBGN-ML file from GitHub

Description

This function can download our pre-generated SBGN-ML files from GitHub repository.

Usage

downloadSbgnFile(pathway.id, download.folder = ".")

Arguments

pathway.id

The ID of pathway. It is a pathway database specific ID. For accepted pathway IDs, please check data("pathways.info"). IDs are in column "pathway.id" (pathways.info[,"pathway.id"])

download.folder

The output folder to store downloaded SBGN-ML files.

Value

A character string. The path to the downloaded SBGN-ML file.

Examples

data("pathways.info")
data(sbgn.xmls)
input.sbgn = downloadSbgnFile(
                  pathway.id = pathways.info[1,"pathway.id"],
                  download.folder = "./")
[Package SBGNview version 1.2.0 Index]